RNA id: XM_022671372.1


Basic Information

Item Value
RNA id XM_022671372.1
length 2827
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC103030426
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 13544952 ~ 13557590 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttctaaacttgTTCAAATGCTCCATATGAACCCATTCGTCATTGACTCTCTCTGGAGCGCCCTCTGGCGGTGTAACAGACCCGGAAAAGACTCCTGAGTTGGTGTTCTCCTCTCTGGAGataatctgtgtgtgtattttagcttagcttagctgacATTTAGCTAACACGATTATCCTTTCTGCTGAATAAACAATCAAATATAGCCTGCTAGTTTTATCTATGGTTCGTTTATAAGAAACCCCCTCGACTATATACAAGTATGAACGTATCGATGCGCTTTTAGTAGTTAGCTAATATTAGACCCGTGGTGTTAGacgctaagctagctaaaactGGCTAGGTTAGATAGCTTGCTAACTAAGCTAACTGACGGCTAACGAGTGTCTGCGGATCTCCGCGTCCCAACACTAACCGCAGCGTTCTTTTAGCTAATTTTCTCATAAAAACGAAAACTAACAAACCAACACAGATTCGGGTGGTGTAGgtgtgtggaagtgtgtgcgtgcatgcatCACATGGGGAGTAGTATTTGAGCCAAAGAAGGGTGGGATCAGTACCATGGCAGGAGAAAGTCCCAGAATTCAGTTGGTGTCAGCAGATGGAGGCCTACAGatTGTGACAGATCAGCAGTTGGGCCAGAAGGTACAGATAGTAACGGCGTATGACCAGACGGGCACCGGCAAGCAGCAGTTCATATTAGCCAACGTAGATTATCCCAGTCAGGATAAACTGCTCCTGAAGCACGAGCCTTCACCTGGAAAAGTCATCCTTACTTCTGCTGATGGCTCAGCTGTCAATCAACTGCTTTTTGCATCACCTGAACTAGCTGGTCAGCAGATACAGTTTGTCACAGAGGGTCCAGACCAAAGTCCTCTTAAACCAGTAGTAGagtattgtgttgtgtgtggagACAAGGCCTCTGGTCGTCACTATGGGGCAGTTAGCTGTGAAGGCTGTAAAGGCTTCTTTAAACGGAGCATCCGTAAGAATCTTGTGTACACGTGCCGTGGATCGGGCGAGTGTGTGATCAATAAGCATCATCGTAACCGCTGCCAGTACTGCAGACTGCAGCGCTGCATGGCGCTCGGCATGAAACAGGACTCTGTGCAGTGTGAAAGGAAGCCAGTAGAAGTGTCCAGAGAGAAGCCAGCGAACTGCGCCCCCTCTATTGAGAAAATCTACATCCGCAAGAACCTCTGCAGCCCTCTGGCAGCCATGCCTACCTTCGTCAGTGACAAAGAGAcagccagGTCTGCCAACCTGCTAGACACTAACATGCTCCTGAACATTCAGCAGTCTCTCTCCAAACTAGACAACACAATCTTCATCCCCTCCTCACCTGACCAGAATGATCCCTGTCAGGGTGATCTGAGCACTCTGGCCAATGTGGTCACATCTCTTGCCCAAATAAGCAAAAACCGTGAGGTGACGGACAGCAGCACTGACCTATCAGGAATGGAAACCATGAGCAATGAAGACAGTTCCATGACTGATGTCCAACCAGATGAGCAGAATTCAGGCGAGGTCACTCAGGATTACGACTCGCTGACAAAGGTGCTCCATCCAGATGAGGTCAGTGGAGAGGCTGTGGAGGGCAGTGTTGTAGAGGAGCAGAATGCAGCCCTGCTGGACCTAGACGGGCCACTGCTGTCTGAAATGCATGTACCTTTTAAGCTGATGATGCCCTTGcccatcccggaatttctgaaTCTAAACTACATCTGTGAGTCAGCATCTCGCCTGCTGTTTCTCTCCATGCACTGGGCACGCTCTATACCTGCCTTTCAGGCTCTCGGGCCAGAGAACGGGATCACACTAATAAAGGCTTGCTGGAACGAGCTGTTTGCTCTGGGCCTGGCTCAGTGTGCCCAAGTCATGAACGTGGAGACCATTCTCACAGCCATCGTCGGCCACCTACAGAGCAGTCTGGAGGAAGaAAAACTCTCTGCGGAGCGAGTGAAGCAGGTGATGGAGCACATCTGGAGAATGCAGGAGTTTTGCAACAGCATGAGTCGCGTGAACCCTGATGCCTATGAGTACGCCTACCTCAAAGCTGCTGTCCTCTTTAGCCCAGATTATGCTGGGATGGACAGTAGTCTTCAGATTGACCGATTTCAGGAGAAAGCCTACATGGAACTGCAGGACTATGTCAGCAGGGTGTATCCGGAGGACACATATCGTCTGTCTAAGCTGCTGCTACGCTTGCCTGCACTGCGTCTAATGAGCGCAGCTATAACCGAGGAGCTGTTCTTCGCTGGGTTAATTGGGAACGTCCAAATAGACAGCATTATTCCCTATATCCTAAAAATGGACTCCACTGACTACAACAGCCAGTCTGTCAGCATCACAGAGTGACTCCAGCCCTGGACACTCTTCATTAACAGCAACAGCAGTGCCCAAGCTATAGGACAGGACATTGCTGCCCTACATGTGACCTTTTGACCCTCAAAGgaccctcaaaaaaaaaaaaaaaaaagaagcagcagCTGGTGTGCACTTGGTCGTTTTAACGAGCGTGCTGTAAACGGGGCAGTGGGACTTTGTAATTagaactgttttttattttccattgctATAGGTATTTACTGCTCTTCATATTGGACGATGGATATTGTGAACTTCAGTTTGCTCATGATTTGGACTCTTGTTTTTATTAGCATTCCTCTGCTTATGAGTTGAAGACAAGAACCTGTAAAGGTGTGAGTGTAAAAGGATGACTATGGTGGCTTAAAGAGCATTGGAATGAATGCTGACTCCTTAATGTATGTACAGGaattatgtatataaatataataaatgtcaaCTCTCATGGAGAGAAGCGTAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86005 lncRNA upstream 3429 13542613 ~ 13543511 (+) True G63755
TU86006 lncRNA upstream 4939 13541161 ~ 13542001 (+) True G63756
TU85987 lncRNA upstream 37343 13451746 ~ 13509597 (+) True G63738
TU86075 lncRNA downstream 16130 13573720 ~ 13677259 (+) True G63791
TU86106 lncRNA downstream 154319 13711909 ~ 13713440 (+) True G63813
TU86129 lncRNA downstream 197275 13754865 ~ 13755370 (+) True G63827
TU86260 lncRNA downstream 609639 14167229 ~ 14242233 (+) False gata3
TU86326 lncRNA downstream 825292 14382882 ~ 14383150 (+) True G63978
XM_007234965.3 mRNA upstream 7890 13507378 ~ 13539050 (+) True fgd6
XM_007234964.3 mRNA upstream 101268 13433569 ~ 13445672 (+) True usp44
XM_022671367.1 mRNA upstream 150677 13386540 ~ 13396263 (+) True LOC103026035
XM_022671368.1 mRNA upstream 151371 13386538 ~ 13395569 (+) False LOC103026035
XM_007234962.3 mRNA upstream 165025 13369680 ~ 13381915 (+) True LOC103036201
XM_007243321.3 mRNA downstream 3846 13561436 ~ 13565100 (+) True ndufa12
XM_007234970.3 mRNA downstream 34022 13591612 ~ 13633235 (+) True tmcc3
XM_007234969.2 mRNA downstream 35526 13593116 ~ 13633235 (+) False tmcc3
XM_015601793.2 mRNA downstream 36266 13593856 ~ 13633235 (+) False tmcc3
XM_007234978.3 mRNA downstream 200738 13758328 ~ 13773588 (+) False rbm17
TU85654 other upstream 385620 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 887422 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85565 other upstream 1078038 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 3896853 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 4106376 9433437 ~ 9440564 (+) False LOC111192948
TU86374 other downstream 1187145 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 2864644 16422234 ~ 16426613 (+) False arid2
TU86763 other downstream 2881630 16439220 ~ 16442449 (+) True G64289
TU86945 other downstream 3195453 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 3275706 16833296 ~ 16864454 (+) False LOC103030423

Expression Profile