RNA id: XM_022671374.1


Basic Information

Item Value
RNA id XM_022671374.1
length 6435
RNA type mRNA
GC content 0.51
exon number 33
gene id LOC103026945
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 13646396 ~ 13692850 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAGGAGCTGTGGGAGGACTGGGCAGATGGACTGGTGTTTCACTACAGCGCGCGCCCACTGACAACTCCAGCACGGGGAGCCTACAGGCGCGCGCGCTTCTCCGGTTtagttaattaatgaattaatcaaCACGGACAGCGCGAAACTATTAACAGTGACGCATTTACTGTTACTGCAGCTGCAGCAGGGATGTGTCTGTTACACACTGCTACACTTCTCACTCTGGGTTTGGGCCTCTTGGCACAGTATGTTCCTGACCACAATGATAAGTGTGCGGAGGGGAGCTGTTACCCAGCCACCGGAGACCTGCTGATTGGCAGAGCTCATCGGCTTATGGCCTCATCCACCTGCGGTCTGAATGGACCCGAGACCTACTGCATCGTCAGCAACATGCAGgcTGGGAAATGTTTTGATTGTGACTCTCGGGAGACATATGATGAATACAGTTATCCCAACAGTCACACCATCGACAACGTGGTCACTACCTTCACTCCGAACCGGCTTAAAACCTGGTGGCAGTCCCAGAACGGAATGGAGAATGTGACCATTCAGCTGGACTTAGAGGCTGAATTCCacttcacacatctcatcatgACCTTTAAGACATTTCGTCCTGCAGCAATGGTCATCGAGCGGTCAGCTGATTACGGGCAGAGCTGGAAGGTGTACCGTTATTTTGCCTTTGACTGCTCCGAGTCTTTTCCATACATCTCACAGGGTCCAGTCGTTAATGTGGACGATATTATTTGCGATTCACGCTACTCAGATATGGAGCCTTCAACAGCGGGAGAGGTCATCTTCAGAGCACTTGATCCTGTGTTTAAGATCCCCGACCCTTACAGCCAGAGAATCCAGAacCTGTTAAGAATAACCAACCTCCGGGTGCGGATGCTGAAGCTGCACACTCTCGGTGATGACCTGCTGGATGGGGGTGAGGAGGTGAGGCGAAAGTATTACTACGCACTCTACGACATGGTTGTCCGCGGCAACTGCTTTTGCTATGGCCACGCCTCCGAGTGTGCACCAGTTCGAGAGAGCGAGCGGGGAGAAGACGGAATGGTTCACGGCCACTGTATGTGTAAACATCACACTACTGGACTGAACTGTGAGGAGTGTGAAGAGTTTTATCAGGATGCTCCATGGAAACCCGCGCAAGGCCGGAGCACCAATGCATGCAAGAagtGTGAGTGTAACTATCACTCAGACGAGTGTCACTTTGATATGGCGGTGTACCTGTCGTCAGGGAACGTGagtggaggagtgtgtgataACTGTCAGCACAACACACAGGGTCAGCACTGTGATGACTGCAAACCATTCTATTACCAACACCCCAACAAACATCTCCGAGACCCCCGCATCTGCAGGCcgTGTGACTGTGACCCGCTGGGCTCTCTGAATGACGGTATATGTGACAGTGTGACGGATGTTCTGAAGGGTCTGATAGCGGGACAGTGTCGCTGTAAACCCAATGTGGAGGGGGAGAGCTGCAACCACTGTAAACCGGGACACTATGGACTCAGCGAACACCCACTGGGCTGCCTGCcgTGCAGCTGTAATCCTATGGGAACACTCCCTGGAGGAAACCCCTGTGACACAGAAACAGGACGCTGCTACTGCAGACGCCTCGTCACCGGCCAGTACTGTGACCAGTGTTTGcctcaGTTCTGGGGCCTCAGTAATGACATGGACGGCTGTCGACCATGTGACTGCGATCTGGGCGGGGCTTTGAATAACGAttgTCCTCCAGTAacagggcagtgtgtgtgtcgAGAGCACATGTTTGGCCGGCGCTGTGACCAGATGGAGTCAGGTTATTATTTTGCTTCCTTGGATCACTACATCTACGAGGCTGAGGATGCCGCATTCGATCCGGCAGTGAAGGTGGTCCCAAGGCCTCTCCCTGCAGATCGTCATCCCACTTGGACTGGCATTGGCTTTGCAAACGTGCCTGAAGGAGGAACCCTCAGATTTACCATCGACAACGTGCCACAGTCTATGGAGTACAGCCTGCTGATCCGCTATGAAccacagttgCCAGATGTGTGGGAGCAGGTAATGGTGGATGTAAAGCGTACTGGATTTCCTTCACCATCAGCACACTGTTCACCTCCTTATGCTGATCAGCAGAGTGCCTCACTGCCCCCAGGATACAGGTATGTGGTTCTACCCAGACCGGTCTGTTTGGAAAAGGGACAGACGTACACAGTGGAAATGTTGATGGCTCTGTATTCATCAAATGATCTTCATCAAAATCCACACATGCTCATCGACTCTATTGTGCTGGTGCCTGCGGTGAAGGATTTGGAGCTGTTCTCAGGATCGCCTGACAGACAGGAAGCATGGACGATGTTCCAGAAGTACCGCTGTCTAGAACAAGGCCAGAGCGTCCAGAAAACGCCAATGACTGACATCTGCAGAGAATACATCTTCAGCGCATCTGCCCTGATGCACCAAGGAGCCATGGAGTGTCAGTGTGACCCACGAGGCTCTGTGAGTTTGCTGTGTGACTCTATTGGTGGTCAGTGTTCATGTCGGCCGAATGTGGTGGGCAAGAGGTGTGACACCTGCTCCCCTGGAACCTTCCAGCTTGGTCCTTCTGGCTGCAGATCGTGTGAGTGTGATCCAATGGGTTCCCTTAATGACTTCTGTGATACCACTACCGGTCAGTGCCCGTGTCTGCCGGGCGTGTACGGACGTCAGTGTGCACACTGCCTGCACAACCACTGGGGCTTTCCTCACTGCCAGGAGTGCTTCTGCAACGGTCACAGCCACCACTGCCACCCCCAGACCGGACAGTGCCTGGAGTGTAGAGACCACACCACTGGACAACACTGTGAGAGGTGTGAGAGCGGATATCATGGGAATGCGTTGCTCAGCAGCGGGGAGCACTGTCGGCCCTGTATGTGTCCGGATGGCCCGGGGAGCGGCAGGCAGTTTGCTGACACCTGCTACCACAACCCCAACTTACGCCAGCTGGTCTGTGTTTGCAGCCCAGGATATAAAGGATCCAGGTGTGAGGAATGCATGCCTGGTTATTATGGTAACCCTCATGTGGTGGGTGGGCGGTGCCACCCCTGTCAGTGTAACGGAAACATTCACATGCACGACCCGGGGTCCTGCGACTCCCGCACGGGCGTCTGCCTCAGGTGCCTCTTCCACACTGAGGGCCACGGGTGCCAGCACTGCCGCCGCGGTTACTACGGAGATGCCAGCACTCAGAGCTGCCAGAaGTGTATGTGCCTGCCACTGGGCACTGCTTCTCAGAGCTGTAGGGatggtgagtgtgagtgtgaccGTGTGAGTGGGCAGTGCCCGTGTTTGCCCGGGGTCGTGGGACTGAACTGTGACCGCTGTGCCCCCAACACCTGGAACATTAACAGTAAGGAAGGCTGCCAGCCATGCAAGTgccaccccacacactcctaCAGCCTCTCCTGTGACCTGcTCTCCGGTCAGTGCTCCTGTAAGCCTGGTTTTGGTGGCAGGGCATGTGGGGAGTGTAGAGAACTGTTCTGGGGTGATCCAGAAATCAAATGTCATGCGTGTGACTGTGACCCGCGGGGCATCGCTACTCCACAGTGTAACAAGATGACGGGcacctgtgtgtgtgcggaGGGCGTGTCTGGCAAACGCTGTGACTCCTGTGGGCGTGGCTATGTTGGGACGTTCCCAGACTGCCAGCGATGTCATAAGTGCTTCAGTGAATGGGATTTGACAGTGAACGAGCTGACCAATCAGACGCAGCACTTGGTGGGCAATGTGGAGGAGCTGAAAGTGTCTGGTTTGGTCTCGGCCTATCAGGACACAGTATCCAGTCTGGAGGGCGGAATTAAAGAGCTAACACAGATAGTGGAGGACAACAAAGCTCATcaaactctcacacactccgAGAACCTTCTGCGGCAAGCCaaAGAAATGAAGCTGGTTTTGGGCCGCTCTCTGAACCGAACAGAGCAGACTGTGGGTCAGGTTTCTGCAGATCACACCCGAGCCCTGGATGACCTGAACACACTGAGTGAAGAGGCCCAGAGACTTCAGGACAGCACAGAGGATAAACAGGCCCAGGTCCTGCGCATCAAGCACTCCAACATCCGTGGGGCAGCAGACAGCATCAGAGAATATTACCAGCAGTCACGGGAAGCCGAGGGTCGGGCTAATCGGGCCACCACCGACCCCCTCGGCCCGTTGGAGAAGTCTGCAGGCCTGCGTCGGGCCACGGAGACCACCCTGAACGCCATCCAGGGAGAGTACGAGCTGAAGCAGAAGCTGCAGGCTGAGAGACTGGACAGACTGAACAAAGACCTGGAGCAGGAAGACCTGTCCAAACTCAGCCATCGGGTGTGTGGTGGAGCGTCTGGCCCGGACGGCTGTGGAGATTGTGGAGGTCTGGGATGTGAGGGTGAAGATGGATCTCCTCAGTGTGGAGGAGAGGACTGTAAAGGTCTGATCACTCAGAGCAGAGAATCAGAGAGTAAAGCTAAAGACCTGGAGCAGGACATCCTGAACTCACTGAGGGAAGTGGAGAAGCTGCACAGGATGGTGTCTGATGCTCGTGGCCGCGCAGACGAGGCTAGACTCAGCGCTCAGGATGTGGCACAAAAGACCAATCAGAGCAAAGCTAAATTTCAGCAGACCAATCAGGAGCTACGGGAGCTCATACAGGAAATACGAGACTTTCTTACACGTGGAACAGATCTAGGGCGTATTGAGACTCTGGCTGACGAGGTGTTGAAGCTGAAGATGCCGACAGCAGCCGGGGAGCTGAAGGACATAACCGCAGAGATTCGGCAGCATGTGGCCAATCTAACCAGTGTGGACGACATTCTAGCTGAAAGTGCTGACCAGGCCCGCATTGCTGAGGGGTTACTGGAGGAGGCACACGCAGTTAGtgaaacagcAGTCCAGCTGCAGGAGGAAGCTGAAGAAGTGCAGGCGGCGCTGAATGAATCTGAGCACGCTCAGTCTGCAGCAGATGAGAGTCTGAAAGCAGCACAGATTGACCTCAGCTACACACAGCAGAAAATGGCCTCTGTGGAATCAGAGACAGAGGGGTCTGAGTTTAAGTTGAGTAACAGTACTCAGTGGAGGCTGAATCTGGAGAGTGAGGTCCGGGCAGTCAGAGATCAAACTCGGGACACATCTATCAGTGCAGATTTCagtcagagaaaaacagactaCATCTCTGAAGACACGCAGCAAACCAAACGGGCGTTAGAACTGGAGTTGGAGCCTAATTTCAAGTTACTCAGCGGACTGATGGAGCAAAAAGCTGTGGGCGTGTTCGATGCACGTGAGAGGGCGGAGCAACTGCGGCAGGAGGCAAAGAACCTTCTGGATGATACTAGAAACAAATTACAGAAACTATTAGAGCTGGAGAGAGCGTTCTTGGTAAACCAGCGGACTCTGGAAGAGCGAGCGGAGGTGCTGGTGGGTCTGGAGAAGCAAGCTGAGGACGTCCTGCAGGAGCTCAGCCAGAAAATCTCCGGCTACAGTGGCTGCCTCTAACTGCAGCACACAGCTGCCTCTAACTGCAGCATAACTAACTAGATGACTAGATGATTAACCAGATTTTGGATGAAAGCCTCTGCTGATATGAAGCCAACAGGAAAGAAACCCATTAGAACAGTGTCCAACACCAAACTCCTCATGTGCAGCTGCTGCACAGTTAACTGATTTCCCAGATCTTAGACTCCACTCATTATTTACATGATCATATTAAACTACAGGCCTATTAGAGCATCAGTCCTCCTACATATATTAGGGATGTCACTACTGATTATTCTGATTATTAGTTGTCAAATGATAATTGATGATTTGTTTGGTTATTgagtaatttgtttttaaagtcCAAATAACAGCAAGGGGCCTAACTGAACAATGACAAATTATGAAATCAtgctagttttttttaagaatccaAAATaccacatctaaaaaaaatcacttaggtagccttaaaaaagtacaaatacaacataaaaaatgtgttttacccTAGATATTTATACCAGCTTGCTAACAAACCAAATGTAGTCTtacatacaggatacaaaaaaaatgtatgggcCATTCTTGACTAGGAACCTAGGATATTTCAAGACACCAACTGCCCACTATTTAACTCTGTAGCAAATAGTTGtattatacaaataatatatgcaccaaagaaagatagataaataaaataccatataaagagttttattttaaacccCTCTACAGCTTATCCATTCCccttaataatattatttattggcCAAATATGGAAAAATGAATTAATCATATAGATCacattttaatactaaaataaatatgtgaaaaagGCTTATAATGCATTTTGAAACTAAATCTTTCACATATGCCATGTTTAAATGATGAAACAGGCTATGAAACGaccaaagataaataaaatatcatatttgtGTATTAAA

Function

GO:

id name namespace
GO:1902017 regulation of cilium assembly biological_process
GO:0007517 muscle organ development biological_process
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0007634 optokinetic behavior biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86134 lncRNA downstream 84302 13561359 ~ 13562094 (-) True G63830
TU86043 lncRNA downstream 102828 13542626 ~ 13543568 (-) True G63773
TU86041 lncRNA downstream 102871 13542626 ~ 13543525 (-) False G63773
TU86026 lncRNA downstream 198597 13444767 ~ 13447799 (-) False G63766
TU86029 lncRNA downstream 198597 13444767 ~ 13447799 (-) True G63766
TU86164 lncRNA upstream 65413 13758263 ~ 13760003 (-) True G63849
TU86167 lncRNA upstream 71914 13764764 ~ 13769051 (-) True G63852
TU86219 lncRNA upstream 148626 13841476 ~ 13842239 (-) False prkcq
TU86231 lncRNA upstream 298405 13991255 ~ 13991792 (-) True G63904
TU86283 lncRNA upstream 397529 14090379 ~ 14093476 (-) True G63939
XM_007234968.3 mRNA downstream 139102 13474323 ~ 13507294 (-) False vezt
XM_007234967.3 mRNA downstream 139102 13474323 ~ 13507294 (-) False vezt
XM_015601791.2 mRNA downstream 142143 13474323 ~ 13504253 (-) True vezt
XM_015601792.2 mRNA downstream 142144 13474323 ~ 13504252 (-) False vezt
XM_022671370.1 mRNA downstream 177320 13452956 ~ 13469076 (-) False LOC103026355
XM_022671378.1 mRNA upstream 19384 13712234 ~ 13755482 (-) False LOC103038708
XM_022671377.1 mRNA upstream 19384 13712234 ~ 13755364 (-) False LOC103038708
XM_022671376.1 mRNA upstream 19384 13712234 ~ 13755364 (-) False LOC103038708
XM_022671375.1 mRNA upstream 19384 13712234 ~ 13755364 (-) True LOC103038708
XM_022671379.1 mRNA upstream 19384 13712234 ~ 13755354 (-) False LOC103038708
TU85708 other downstream 1280657 12320555 ~ 12365739 (-) True G63516
TU85294 other downstream 3235165 10314799 ~ 10411231 (-) False G63217
TU85152 other downstream 4023608 9618661 ~ 9622788 (-) True G63104
TU84600 other downstream 5472594 8166678 ~ 8173802 (-) False LOC111192870
TU84254 other downstream 6908448 6735163 ~ 6737948 (-) True G62484
TU86395 other upstream 1092471 14785321 ~ 14786149 (-) True G64034
TU86473 other upstream 1301314 14994164 ~ 14994832 (-) True G64060
TU86884 other upstream 2892215 16585065 ~ 16585647 (-) True G64387
TU87029 other upstream 3189485 16882335 ~ 16887903 (-) False G64492
TU87032 other upstream 3189485 16882335 ~ 16887903 (-) True G64492

Expression Profile