RNA id: XM_022671377.1


Basic Information

Item Value
RNA id XM_022671377.1
length 2330
RNA type mRNA
GC content 0.42
exon number 10
gene id LOC103038708
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 13712234 ~ 13755482 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGGATCAGTGACTGGGACGTCTCCGGTCTGGACTGAAGGAGCTCTGTGGAAAATATAATTTTGCCTGAGGAACACAGCTCGGTACAGCACCGCCATATGCTACCCTGATCCACTGTGACCCACGGCGTTATTTATACCCCCAGCCCACGCGAAGTGTTGGGACGCTCTGCGGCAGACCCAGTGTTGGTATTTCTGGACATGCGGGCAtcatctctcctcctcctcacctTCATCTTCACCGCGGCTGAGTACCCCCTCCACATCTTCGGGGTAAACGgaaaGTGTGAGGAACCTAAACAAGGGAATAACTACGGAAATATACCAGACAACATTAGTTATGAAGAAAATTCCAAATTCCGAATGCCGTGTGTAGAAGGCTATTTAAGAAAGGCTGGGACATCCAACCTCTTCAGATGCCAAACAAATAATACACATGGTCAACTGGAATGGAATAATTGGCCACCGCTGAATTGTACACCTGATCCAAGAAAACAGCGATCAACTACAGATGATCCAACCACAGttgcAAACAAACAGACCCCCATCACTGCCACAAATCCCACTCTCTCCACCCTCAGTTCAGCAGAGAAGCCTTATTTTACCACCATGGGAAAAACAATGGACACGTCTACGACTCTCGGACAGACCACCTTTACAACGACACACACAGTTGCCACAACAGCAGAAACTTCCCAGAACACAACTCTGAGGACCACAACAAAGGAGGAGGAGCCTATGACCACAACCGATAGTGTAACACTTTCCTCGTCCAGTACactgacagacagagaaaaTCTGACCACAATGTCCTTACAGTCCACCAGTTCAAGCAACACCAGCACCACCGTCCCCACCCTTAAAACCAGCACCAACGCCAGCACCGCCATCATACCCAGCTCCGCCATCATACCCAGCACCGCCATCTTACCCAGCACCACCATCATACCCAGCACCGCCATGATACCCAGCACCGCCATCATACCCAGCACCAACACCATTACAGgACCCGGTAAGGGTGACCGCCTATCTTCTAAAGCTGTGGGAGGAATAGCTGCAGGAACAGTATTACTGCTGATTGTTGTCGCAGGGTCAGCGGCAGGAATATTTATCTTGTGTAGACGacaAGATGTCAGCAGCACAGCGGTGGAGATGAGACTGCCCCCCGGCTCGGATCAACCCCTGttagacacacacactgcaacctTACTTACCAGCTGCCCAGACTCTGCCCAAAATCCCAAAACAGACCCATTAATTGTTGTTCAGCAGGCATAATCCGTTggacgtcttttttttttttttgtgaatgctTTTgccatgtatatgtgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtatatatgtatatgtctgtatgtatatacaaaaatacagttgtatgtttttcataaacataaaactaaataataaagttaAGTTCTTGTAAAGTTCAGATCAGGCCTTCCACATCTCACCAGTTATTTTTGGATGAAATTTTCAAGCCTAGTACATTCTTCAGATTTTGTGCCACCATTCATCCATCATTACCTTCAGTAAAAGCAAGTTTCAACCAGTGGGTCACAGCTCCCCCCAGTGGGCAACTTAGTTCTTTTTCTGTTTGAAAAAATGTAACGCATGTGTAAATCtaagcatggagttgtagaggttcctaatgaagtCCTATGATAATCCATCCAGCACCCAATTAATACTTTGTTGCAACAATTATTACCTAAATGTACACATGATTATTCTATATTAATCACTAATTAGAGacaataaaacacatatttCAGCAGTTATTTCCCATATTTCGCCTTCCAAACACAGGAATTATATTATTCTGTCAACATGTCAAACATGCATGTACTTTTACAGGTGGCATAATAtagtaaatacatttaagatTGCCAAAAGGCAAAATAACAACTGCTACTGGCTTATAACAGCCGAATTAAGCTTTAATTTTTTGCTGCCAATGACACactgaaatatctgcatttagGTAATAAATCATGTTTAGGAAAGtgcaaaaatgtgtttattgggCATAGTAACAACTAATACTACACTTATTAGTAAGTTTCACTTAGTAGCAGACCCTTGATTATGTATTAATAAAGGTCACACTGAATAAAGCACAATGCAATGTAACTCAGgaatatatactgtttattttacaattataaTTTCTCAGacaatttgcaaaaaaatacaccttttcacattgtgtttttttaaatgattttacattgtaaattacatattaaagacattaaagctatacaagaACACATGCTAATGTTTTGGTAaacaaagtgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86134 lncRNA downstream 150140 13561359 ~ 13562094 (-) True G63830
TU86043 lncRNA downstream 168666 13542626 ~ 13543568 (-) True G63773
TU86041 lncRNA downstream 168709 13542626 ~ 13543525 (-) False G63773
TU86026 lncRNA downstream 264435 13444767 ~ 13447799 (-) False G63766
TU86164 lncRNA upstream 2899 13758263 ~ 13760003 (-) True G63849
TU86167 lncRNA upstream 9400 13764764 ~ 13769051 (-) True G63852
TU86219 lncRNA upstream 86112 13841476 ~ 13842239 (-) False prkcq
TU86231 lncRNA upstream 235891 13991255 ~ 13991792 (-) True G63904
TU86283 lncRNA upstream 335015 14090379 ~ 14093476 (-) True G63939
XM_022671374.1 mRNA downstream 19384 13646396 ~ 13692850 (-) True LOC103026945
XM_007234968.3 mRNA downstream 204940 13474323 ~ 13507294 (-) False vezt
XM_022671382.1 mRNA upstream 85829 13841193 ~ 13887868 (-) True prkcq
XM_022671383.1 mRNA upstream 85829 13841193 ~ 13869698 (-) False prkcq
XM_022671385.1 mRNA upstream 167175 13922539 ~ 13997493 (-) True sfmbt2
XM_007234980.3 mRNA upstream 324925 14080289 ~ 14089552 (-) True kin
XM_022671174.1 mRNA upstream 1234982 14990346 ~ 14992730 (-) True LOC111192906
TU85708 other downstream 1346495 12320555 ~ 12365739 (-) True G63516
TU85294 other downstream 3301003 10314799 ~ 10411231 (-) False G63217
TU85152 other downstream 4089446 9618661 ~ 9622788 (-) True G63104
TU84600 other downstream 5538432 8166678 ~ 8173802 (-) False LOC111192870
TU84254 other downstream 6974286 6735163 ~ 6737948 (-) True G62484
TU86395 other upstream 1029957 14785321 ~ 14786149 (-) True G64034
TU86473 other upstream 1238800 14994164 ~ 14994832 (-) True G64060
TU86884 other upstream 2829701 16585065 ~ 16585647 (-) True G64387
TU87029 other upstream 3126971 16882335 ~ 16887903 (-) False G64492
TU87032 other upstream 3126971 16882335 ~ 16887903 (-) True G64492

Expression Profile