RNA id: XM_022671389.1


Basic Information

Item Value
RNA id XM_022671389.1
length 2141
RNA type mRNA
GC content 0.37
exon number 4
gene id LOC111192957
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 14721032 ~ 14727355 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaagcgCGCCTATTCTTACTTTAAAACAAACAGAGCTTAAAACAGTACCGTGATTAGGTGGCTACAGAAGCAATGAGTATTTTACGAAGAttaatgaaaaatgtttatgtaagaaaaaacaaaaaaacatcttataACCTGATCAGATGGatgcaaaatgaaaaattacTAAAACGCAAACTAAAATGCAAGAGGTGTAACAAGAGGATGAGGATGGTACATTCCCACTGTGCTGACAATTTTATATGGGAGTGTCGAAGGCGGCATTGTGGAAGGTTGAAGAGAAGTGTGAGAGCCGAGTCGCTCTTCTCAGGTTCCCACAGTGACCTTTTTACATGGATGAAATACATACATAGgtTCTCACAAGGCTTACAAATGCGACAGGTGGACATGATCCAAGATGGAATAACAAAGAGCACCAGGACCCTCTCTATGATGTCCAACAAACTCAAGCAAATGTGCGTCAAAAGTCTGCGAAAGTTTCGCAAAAAGAAAGGACAGAAAGTGGGGGGAGCTGACATCATTGTTCAGATTGATGAGAGCAAGTTCTGCCACAAGCGAAAGTATGGCAAAGGTCGCTATGGAAACActtggaggaggaagagaacGTGGGTATTTGGAATGCTTGAAATAAGGCCACACCTCAAGCGTCCCATACTCCGCCTGgtcaaaaaaagagacaaaaacacactgatcCCGATCATCAGAAAACATGTTAAGCCTACGACTCTTGTAGTAAGCGATGACTGGAGAGCTTACTCAAGCCTAAAAGAGGAAGGATATCGGCATGTAAGGGTTAACCACAGTCAAAACTACATCGACCCGATTTCAGGTCTGCACACACAAAACATCGAGAGGGCATGGCAGACATACAAAAAGGAGGTTTGGCATATGAGAGCCAACAGGTCTGAGAAATCTTTAAGAAAGCATCTCTGCTTCATAGAGTGGACATACTGGTTGGGCAGAATGCACAAATATGGGGTGCTTGGTAGACTTTTTAAAGACATCAGATGTGCATAGAGCAAAAAGGTAATTCAGTATActgtttttgatatttcagtaatgtgtatgttttgttttattggctGTTTGACCTGTAATTctgaaatggtttaaaaatgactgtagtaatgtgattatatatatatatgtttttttgtttgttttttttttggtgtgtgtttataatctttattcagaactttatacccctctagcccacacctggcattaaatGGTTCCAATAGCTTTGTTTATTAATCTGCCCTAGGGAGATATATATTGTTGGCATTACTTCTCTAAGGGGACTAAACAAgttaatgttaaagttaaagttaatgaCCTGTTAAACGGTCACTTCTTTCAGACATTTTTATTCACAATTACCTGGAAAAATGTTTCATATAACATTTGTGTTTATgtgaaaaaatgtgtaataaaaccTCTTCTTTTTCAAATCCCTTGTACTTATTCCTCATTGCATATCTATGGTAATGTAATGGACATGAAGCTGAGAGTCAACTGACATGCAGTTGACACAAAGAAGTTATTTAACTTAGTTAAAGTTGACCATCATGGTTttactttacttggatggtccaaatgatgattaaaatacatgtaaaaggTGAGTCCTTGACTTTCAACATATATTCAGCATATACGCAACTTAGTGAAATATAAACTAAGTTGAGAGTCAACTGACATGCAGTTGACACAAAGAAGTTATTTAGCTTAGTTAAAGTTGACCATCATGGTTttactttacttggatggtccaaatgatgattaaaatacatttaaaaggtGAGTCCTTGACTTTCAACATATATTCAGCATATACGCAACATAGTGTTCAAACAAACTCAATTGAGGGTCAACTGACATGCAGTTGACAGTCTATGTTTTAATTGCACTAATTGTTGTTGGGTGGTGCAAAACATAGAGATGTCATGTTACACTAAGGTGCCTATCAGTAGATAAATCTTTGCTAGATGTAGTTGAgaatttactttttatgttgttGATATGCAGTTGACACGTTGTTGAGATGCAGATGACACTCACCTGATCATCTATATGATATAATGTGATGCCACTATTGACAGAGGAACTTGATATTCATGGAACAGTTCAGTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86340 lncRNA upstream 246633 14474026 ~ 14474399 (+) True G63992
TU86327 lncRNA upstream 287245 14432971 ~ 14433787 (+) True G63979
TU86326 lncRNA upstream 337882 14382882 ~ 14383150 (+) True G63978
TU86260 lncRNA upstream 478799 14167229 ~ 14242233 (+) False gata3
TU86129 lncRNA upstream 965662 13754865 ~ 13755370 (+) True G63827
TU86382 lncRNA downstream 57554 14784909 ~ 14859165 (+) True G64022
TU86412 lncRNA downstream 225380 14952735 ~ 14956365 (+) False G64047
TU86432 lncRNA downstream 225380 14952735 ~ 14957462 (+) False G64047
TU86433 lncRNA downstream 225380 14952735 ~ 14955361 (+) True G64047
TU86419 lncRNA downstream 226476 14953831 ~ 14958268 (+) False G64047
XM_007234986.3 mRNA upstream 478798 14219485 ~ 14242234 (+) False gata3
XM_007234987.3 mRNA upstream 478798 14226439 ~ 14242234 (+) True gata3
XM_007234988.3 mRNA upstream 480610 14226436 ~ 14240422 (+) False gata3
XM_007234985.3 mRNA upstream 524486 14102939 ~ 14196546 (+) True taf3
XM_022671388.1 mRNA upstream 622486 14090332 ~ 14098546 (+) True atp5c1
XM_022671175.1 mRNA downstream 269763 14997118 ~ 15000582 (+) True fam200b
XM_007245020.3 mRNA downstream 694646 15422001 ~ 15426787 (+) True LOC103045633
XM_022671152.1 mRNA downstream 836662 15564017 ~ 15571205 (+) True LOC111192874
XM_022671394.1 mRNA downstream 1176987 15904342 ~ 15923062 (+) True ccdc87
XM_007245047.3 mRNA downstream 1176987 15904342 ~ 15923062 (+) False ccdc87
TU85654 other upstream 1559712 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 2061514 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85565 other upstream 2252130 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 5070945 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 5280468 9433437 ~ 9440564 (+) False LOC111192948
TU86374 other downstream 17380 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 1694879 16422234 ~ 16426613 (+) False arid2
TU86763 other downstream 1711865 16439220 ~ 16442449 (+) True G64289
TU86945 other downstream 2025688 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 2105941 16833296 ~ 16864454 (+) False LOC103030423

Expression Profile