RNA id: XM_022671411.1


Basic Information

Item Value
RNA id XM_022671411.1
length 4455
RNA type mRNA
GC content 0.55
exon number 13
gene id LOC103039070
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16895580 ~ 16945665 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccatccatccatccacccttccttccatccctccatccctgcATCCCTCCGCCGCCCCGCTCCTTTATACCGGAGCTCTGTGTGAAGCTGCGAGTGTGTGGTGAGgctggtgtgggtTCCCAGGAACCATGAGGCATGCCGCGCCGCTGTGGCCCAGTGCGGACACAGTTGCAGGGGAAGATTGAACGCTGCTGAAGTCTCAAGGCTCTGAGCCTTCTGGAGTACTGCCATGACCAGTCAGGGTGGTGGCAATGGGGACACGCCCGGTCCCCCGCCGTCCTCGTCTTCGCCTTCGGCTTCATCTTCGTTCCTCAGGCCGTCCGCTGGCCCGAAGCTGCAAGTTCAGCGCTCGCTGTCTCGCGACACGATCACCATCCACTTCTCCGCTCAGGGTAAggatgaggaagaagaagatgaagaactGTACGGGCTGGCTGCCACCACGTCCGGACCGGATGGAGACGAGCAGGGCGTAGCGACAGCTGTGGAAGCCAGTGAGGAGTTACTGTTCGAGGGGGCAGGGACGGGGACAGGTCCAGGAGGTCTCCCTGTTTCGTCTACTGTGGCGTCGTCATCCCCAGCCCTTTCCATCCAGCCGTTACCATCCACCACATCGTCCATCGTTTGTAGCCCTGCCAGCTCCTCTTGGCCCTCAACCCAACCTCTCGCTTCTACAACCTCCTCCACCTCTTCCTACACCACCGGTTCTCCAGCCACCAGGTCCTCAAAACCATTCCTCAGCCTGGTCAAGTCTTTATCTACTGACGTAGAGCCTCGCGAAAGCACCACGCCAGTTCCTGTTCCTGCTCCTGCTTCTGCTCCTCAACCCAAGCGCCATCGCCACTTGATGAAGACCCTGGTCAAGTCTTTGTCCACCGACACAGCTCATCCGGAACAAGAATCGCCATCCCATCGCCAGACGGATTCTCGCCTCAACTTGCACCTTTTTAAGCCTTTCGCCCAACAGAGGGTCACCGTACCGCCTGGCGGCGACTCCAAGACGGCACCATCCTCGCCCATAACCTCACCCGATGGGCGCACCTTCTTCAAAGTCCAAGAAGTTGAGGCGCGAATCGAGGACACCAAGCGGCGTCTCTCAGAGGTCATGTGCGAACCTCTTCAATTGCTCAGCAAGATCATTGGCGAAGAAGGGGGGAGTACCACTAGCGCCGTCGCCGCCACAGCCATTGGTGGTGGTGCCACAGTGCCAGGGCAAGGGAGCAGCCATCGACCCAAAAGCCTCTCCACTAGTGCCACAGAGCTTTCCACTCTGACCACCCTCAATGGCCACCTGGAAAGCAACAGCGACTACTGCATCAAAGAGGAAGAAGACCTCGAGGGCGAGAGTCCTCTAGAAGGTACCCTACCCAGGTCACCATCGCTAGGTCTGGACAGGTGCTTCATGTCTGCTCTGGCCCGGCAGGAAGACGAGGAGTTTTGCGAACTTTACAGCGAAGATTTCGAGCTCTGCACGGACACCGAAGCTGACGGGGAACTTGCAGACTCCACCAGGCTCCAGCGAGGGAGCACGGCGTGCAGCGAGGAAGCAACCGAGGGCGAGGAAGAcggtgaagaagaagaagaggaagatgaCGATTATGATAAGTCTACGGGAGTACCGCAAAACGGACTCATTCTCCTCGTTTCCATCGTGTACGGCTACTTCGTGCTGCCGCTGCCCACGTACGTAGGGGGGGTGTTGCTGGGAGTCGCCGCTGGCTTCATGCTAGCGATTTTGGTGTTGTGGCTCTCGGCCCCGCGCCGGGTCCCGGCCTGGGGCCCTACTTGCTTTAGCCGGTCCAGGAGAGAGCGCTGGAGTGGGGTCCCTTTGGACATCAAGGAGCCGAGCATCTACAAGggttGGATGAATGAGATCCACAGCTATGACCCGGAGTCGTATCACGCCACACTCACCCACTCAGTGTACGTACGCCTGGAGGGCTCCGTGCTCCGCCTCTCCAAACCCAACCGCAACATCCCCCGCCGGGCCAGCTTCAGCGAGCCCAAACCCGACGTCACCTACATCAGCCAGAAGATCTACGACCTGACCAGCAGCAAGATCTACCTGGTTCCCCACAGTCTGGCGAGGAAGCGAGTGTGGAATAAGAAATACCCAATCTGCATCGAGCTGGCCAAGCAGGACGACTTCATGTCCAAAGCCCAGGGGGAGCGTCCCGACCCCGCGGAGGAGAAGACTCCCGCCCCGGTGGAGAAGAGCGAGGGGACAGCGGGAACCGAGGACAACAGGAGACCGTCCTCAGACCCTGTCCTGTTCCTGTTCGGGAGGACGGGCCGGGAGAAGGAGGAGTGGTTCAGACGAATGCTTCTCGCCTCCAGACTCAAAGCTGAGATTAAAAAACCTCCAGGCCTTCCCTCACCTTTTGTCCCCTCCCACGGGcgcagcagcagccaatcaggcgCTCTCTCTCACAGTCGCAGCAGCAGCCGGGGCAGCCTGGACGACCTGCTGCAGTCTCAGTCTCAGACCCGGCAGAAAGACCCGGGGGGCGGAGCCAAACAGAAAGTTCTGGACTACAACGTCTACATGGCCAAATACATCAGCCAATCATCAGGGAGCCCTACTGCCAGCCCCGCCCACAGCACGGACAGCAGCCCGCGGACCGTCAAGAAGTTTCCGCATGGTCTGAGTTCAGAGGCCGGGTCTGAGGCCTGGGTTAATGCTCTGCTGGGTCGTATCTTCTGGGACTTCCTCAGGGAGAAGTACTGGGCTGATGTTGTgtccaaaaaaatccagatgAAGCTGAGCAAGATCCGGCTGCCGTACTTCATGAACGAGCTCACGCTGACTGAGCTGGACATGGGCATGGCTATACCCAAGATCCTGAGATCCTCCAAGCCTTCAGTCGACCATCAGGGTCTGTGGTTTGATCTGGAGATCTCCTATAACGGATCTTTTCTGATGACTCTGGAGACGAAGATGAACCTCGCTCGGCTCGGGAAGGAGGGAGAGGGTTTAGGAGAGCAGGGAAAAGAGGGGCCGCGCACGTACTGCCTGGCTGACAGTGATGAGGAGTCGTCCAGTGCTGGATCTTCTGATGAAGAGGATCCAGCAGAAGATCCTGAGATATCAGGAGTGGAGGGCTACGTCGGGGGACATCGTCCCAGCAAGATCATGCGCTTCGTGGACAAGATCGCCAAGTCCAAGTACTTCCAGAAGGCCACGGAGACGGAGttcatcaagaagaagatggaggaGGTGTCCAACACCCCCCTGCTCCTGACGGTGGAGGTGCAGGAGTGCCGGGGGACGCTGGCCGTCAACATCCCGCCGCCCCCTACAGACAGGATATGGTATGGATTCAGAAGTCCACCACACCTGGAGCTGAAGGCCCGACCCAAACTCGGGGAGAGGGAGGTCACGCTCGCCCACGTGACCGACTGGATCGAGAAAAAACTGGATCAGGAGTTTCAGaaaatatttgTTATGCCAAACATGGACGACGTATGGCTTCCCATCATGCACTCTGCCATGGACACGCGGTCCAACCTGAACTTGGTTACTGTGATTTCTGATGCTGTGAAATCTGAGGCGACCCTGGACCTGGAGGATCCTGCAGAAGAGCTGTGAACCTGCTGGAAAACTGCAGAAAACCTGAGGAATGTGTTGGATACTGGTGGTGCCTGCTGGGTAATGGGGAGGGTAATCATCCTCACTGTTTACTCAAGTGGTTTTAAGCTCGTTTGGGTctaaatgcatattaataatgcatttattacagGAAGAAGCTGGAAATGAACACTTTTATATTGGTTTTGGTGTAATGTGAAGTATCGTACAGCAGGGGAATGGATGGATCCATGGAAGAACGTATAAAAGCAGCGTATAGAACCAATCACCTGTATGCTATACGCGACGCCTCACTGCTCCAGCGCTTTTACCTCTCATTTCCAGGTGGGTTTAGGCGCCATCTTGGCCTCCATGGCATCAACCCGGGAGCGAATGAACTTAATCCAGGATAAAGAGTCTGAATTCAGTGCCCTGCAGCACAGCGATCTCTGAATAATGTAAACTAAACGATGGATGAATGAATTTTTAATTCAGATTGTAAAGCGATTCGGGAGATTATCAGATTTGTGTGCCATGCTGATCCTCATCTGCTTTTCGCAtcggaaaaaaatgtgatttacagCATCAATAACCAATAAAACCAACATCAACATCAACATACGTATAGAAAAGAAAGTACCTGCCGCCACCGACCTCTGCCAATCACATTGCTGCCTGAGGAGGCATCTACAGCGGTGCGTAAGAGTTTTTGGAGAAAAATGactaattttctatatttctgtgtaaaatTTGATCATTggacatttttcacaaaaacgtAGAACTAGAAAGAAGAACCAGTGGAATCAaacaaatgaaattaattaataatatattatttagactcattttttaagtgagaaaaattatatacagctctggggaaa

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87026 lncRNA downstream 3115 16877616 ~ 16892465 (-) True G64491
TU87019 lncRNA downstream 4797 16889102 ~ 16890783 (-) False G64485
TU87034 lncRNA downstream 7677 16882335 ~ 16887903 (-) False G64492
TU87036 lncRNA downstream 11808 16882335 ~ 16883772 (-) False G64492
TU87017 lncRNA downstream 56281 16804561 ~ 16839299 (-) False G64485
TU87053 lncRNA upstream 3144 16948589 ~ 16948788 (-) True G64508
TU87055 lncRNA upstream 7143 16952588 ~ 16952870 (-) True G64510
XR_002650194.1 lncRNA upstream 94397 17039842 ~ 17042071 (-) True LOC111192963
TU87206 lncRNA upstream 199833 17145278 ~ 17145667 (-) True G64619
TU87209 lncRNA upstream 210161 17155606 ~ 17156047 (-) True G64622
XM_022671153.1 mRNA downstream 188505 16696081 ~ 16707075 (-) True LOC111192875
XM_007237943.3 mRNA downstream 235073 16654113 ~ 16660507 (-) True LOC103027149
XM_007237945.3 mRNA downstream 317764 16529205 ~ 16577816 (-) False LOC103027662
XM_022671416.1 mRNA upstream 100069 17045514 ~ 17079220 (-) False LOC103042974
XM_022671415.1 mRNA upstream 100918 17046363 ~ 17096825 (-) False LOC103042974
XM_022671413.1 mRNA upstream 100918 17046363 ~ 17084481 (-) False LOC103042974
XM_022671414.1 mRNA upstream 100918 17046363 ~ 17084481 (-) True LOC103042974
XM_022671176.1 mRNA upstream 157850 17103295 ~ 17307076 (-) True cep112
TU87029 other downstream 7677 16882335 ~ 16887903 (-) False G64492
TU87032 other downstream 7677 16882335 ~ 16887903 (-) True G64492
TU87035 other downstream 7677 16882335 ~ 16887903 (-) False G64492
TU87037 other downstream 7677 16883331 ~ 16887903 (-) False G64492
TU86884 other downstream 309933 16585065 ~ 16585647 (-) True G64387
TU87262 other upstream 589851 17535296 ~ 17597545 (-) False LOC111192911
TU87264 other upstream 641400 17586845 ~ 17597545 (-) False LOC111192911
TU87266 other upstream 641400 17586845 ~ 17597545 (-) False LOC111192911
TU87272 other upstream 641400 17586845 ~ 17597545 (-) True LOC111192911
TU87274 other upstream 641400 17586845 ~ 17597545 (-) False LOC111192911

Expression Profile