RNA id: XM_022671412.1


Basic Information

Item Value
RNA id XM_022671412.1
length 3552
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC107197347
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18669432 ~ 18683116 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGAACTGGTGGGAGAGATCGACCTGACATCCTGCCACAAAGTGACCGAATTCTCAGTCCAGACAAACTACGGCTTTCAGCTTCACAGTAATAAACTGGTTTATACTCTGGCTGCTATGAATGCTGGGATACGGCAGAACTGGATCCAGGCTCTCCTGGAGAAAATACAGAACCGGAACGCACCTGATGTTACCAGTGTTTCAGGTGATCAGGTGATTCTGCAGGCGAAGGCTCAGCGTGGTCCTGATGTGACTCAGGACTCGCggctcagctccagcagaagAGCCGGACCTGGTGCTGAAACATCAGACTGGACCGAGATCGGACAGATCGGACAGAACGGACATTCGGCGGCCCAGGAGGTGAACGGAGAACCGGAGCTGCAGGATCTCCAGCctgaggagcagcagcaggaggagccGGAGAACCGGATCCTGAACCGGAGCCGGAGGAGGCGGGAGGAGCGCCGGCAGAGGTACGAGTTAGTGATGGCATCTTCAGGACTTCCTGTGGAGGACAGGACCAGCCAGGATCATCAGGATCATCATGAGCAGAGGATGATGGAGATTGAGGAACGCTGGCTGCAGGTGGAGAAGATCTCCATCCGAGACGGGAAAAAGGTGCTGCTGTACCCAGAGAGCCAGAGCAGGAGCTCTGCAGATCTGGAGGACGTTGTAGAACAACACTATCAGAGAACGAACTCAACGAACAAAACTCTCGAAAGTCTCGAAATTCCATGTAAACCTCAGATGATGATCAGTCCAAACATGCAGAACCACATCTCAGCTCTGACTGACAAATATCTACAGACCAAACAGCTTCTTCAAATAGAGAATCTGAAACGACAACATCTCAAAACCCAGCTGAGCTCAGAGCTCGTAACTGAAGCAGAACTGAAGCCCGTCTGCAGGGCGTTGGGTTGCGAAGCGGCTTTAAGTGAATCCAGACTTGGATCGTATGGTTGGCGCGAGGCAAGCCAGGACCGGGAGGAGGAGCGAAGTGAGGCGAGGGTCGACGGGTTCAGCCGAGGAGATGCCGTGACGTTGCTGAGAAAACAAAACGTTGGTTCTGATCCAGCTGTGGTGGAACAGCTCGAGGCGGTGAATCGACACAATCAGGAGCTGTTGAATCAACTCGCTGAGGCCAATCGAGATATTGACCGACTTAAGGCAGAACTGATGTGCCGCCAAATGAATTGCAGCCAGCAGGGTTTGGAGTCTGTAGTGGAGAGTCTTAAGGTGGAATTGGCTGGGAACTCTCGGGAACTGGAGGTGGTGCAGAATCGTTTGGCAGAAGTGGAGGAGAATCTGAAGGAAGCTCAAAAAACCCTACAGTTAAGGGAAGCTACGCTTAAAAGCTTGGGATTCCTTGGTGAAGATAGTGATGATACTTTGCTTATCTTGTCTTCATCCTCAACATCAGACTCATCCTCAGAAGAACTGAGAAATAAGGAAATGTGTGAGCAGGATCTGGAGAACCATAATTTGGACCAAAATGTAGATCAGAATGCATTAATCAGAGAATCTACGCTTCTGAACAGTCCAAAAACAATGGCGGCTGAAGGTGATCAATGGGAAACGTTGGAAGTGTCAAACAATCAAGAGTTTCAAGATGTATGGAGATCATCGGATGGATTTCTGGAAGAGGATGTATCTGAGAAAATCGTTCAAATGAGGTCCAACAACCTCAAAATGCTACTAGAGATCATTAGACCTTTAACTAGGAATTGGCCCAATAGTGAGCAATATTCACTTTCAGATTCTGATGTTCTACAGTTGGAAAGGAACTTTTGGGATGGTTTAgtaaatgcattgaaaaaatacaatctaagcaaaagtattgggacagaaCAAGCTGGTTCTTTGGTACAATGTGTCCAAAAGAAACTGGACGAGATTAGAATGGACCTCCTAGCCCTTAGCATTAATGCTAATAATCCCCATTCCCAGAATAGTGATTTAGATCAACACAGTTCCAATACCTTTCCTAATTTGAATTACCTTTCCAACTTTGACAATACTGGTCTTCATAATGGTTCAATGGAAGACCACAGTGTACAGAAGTTTAGGACATTGCCTGTTGATGAGCATCTAGACAATCATCCAATTTGGAGAGGTCTGAAACATCACGTAGAGAAGAAAGTGGCACTGCTAAACCATGTAGAGTTGGCATCTAAGCTAGAGCCGTCAACAGGCAACAGTCCCACAAACTGGGCTGTCTGCAATCAAACAGAAGACTCATCAAAAGGTCTGGACCCATTGGTCAGTGCAGCTATGGACATCTTCCTGGCCTGTCTGGTTGGGTATCATGATGCTCAGAACCAGGAAAAGACAGTAAAGTCCATCGATGAGGATTTTAATAGCAATATAAAGGGTGTTGACCTCTATGAAGGAACGTTGGTGCAGCCAAACAATATGGCCACCCAGAAGAAGACTGGAGTCAACGAGGAGAAAGAGGCGGAAACGATGGACTCGTCAAAAAGTCGAATAAAAGAACTAGAGCACCAGTTATCCAGAAGTGAAGAGCTCATATCTTCTCTACAGCAGCAGCATGAGGAGGACCAGACCAACCTGAAGGCAGTATATGAACAGGGATTCACTATGCTGAAGAAGTCTCATCAGAAGCTTATAGAAGACCTTCTTCTCCAACACCAGCGAGAGCAACAGCGCCTAATGGAGGAGAAAGACAGACTTCTGGCTGAAGAGACGGCTGCTACCCGCACTGTGATTGCAGCTCTGAACAGAGCCCACAGCTCTGAGATGGAGAGAGTGCAGCAGAAGACGAACTGGGAGAAGAGTAATTGTGATGCCAATATTGCAGAGATACTTAAAAATCACAGagAAGAGCTGGCGTCGGTTCAGAGTGAGCTGGAGGTTCTCTCGGTTCAGTTTTCTCAGAAGTGTTTGGAGAGTGTTCACCTGGCTCAGGCTCTGGAGGCGGAGAGAAAAGCTCTACAGCACTGCCAGCACCAGAACCTAGCACTCAGTACCTGCAACCAGgatAAAAAGCTTGTTACAGAAGAATCCAGAGAACTACAGAGCGATCTCGGCGTGGTGAAGGAGAGGGCCGAGGAGCAGACGGGATATCTCAGGGAGAATCTGAGACTGGATTATGAGGCGTTATCAGAGTCTGAGGAAcagaaaacattattaaacagctGACATTAAACAGTGCAGTACATTTCTGTACATTAAACAgtatttacactatattttactatattttaccaCTGTAGCTGCTGTGTGGCTGTTAGTTATTTATCTATACAGATCTACATAAGCATTcaacagaatgaaaaaaaaatagtattttatttgtgtAGACTGCATTAATACATCTGACCATTACTGAACAAATAATGAGCTTTTATATCTCAACAATTAATACTGATATTGTGAATGGATGTCATATATGGTTgacatatgtatttattttatataaagatatttaaatatttagatcaACAACAAAGAAAGTTACTGTGAGCTATAGACAGGTTTTgtggtatttttattataagctagattaatatattttacaataaactgaaTT

Function

GO:

id name namespace
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component

KEGG:

id description
ko00350 Tyrosine metabolism
ko00965 Betalain biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87713 lncRNA upstream 45933 18556128 ~ 18623499 (+) False G64990
TU87703 lncRNA upstream 53274 18536667 ~ 18616158 (+) True G64980
TU87715 lncRNA upstream 99942 18567027 ~ 18569490 (+) True G64991
TU87519 lncRNA upstream 163705 18504951 ~ 18505727 (+) True G64834
TU87505 lncRNA upstream 247245 18418747 ~ 18422187 (+) True G64822
TU87758 lncRNA downstream 28498 18711614 ~ 18759292 (+) True G65019
TU87784 lncRNA downstream 109066 18792182 ~ 18840564 (+) True G65044
TU87794 lncRNA downstream 150843 18833959 ~ 18834854 (+) True G65053
TU87898 lncRNA downstream 218336 18901452 ~ 18908686 (+) True G65116
TU87909 lncRNA downstream 262210 18945326 ~ 19032751 (+) False G65122
XM_022671448.1 mRNA upstream 14743 18652128 ~ 18654689 (+) True LOC111192977
XM_022671438.1 mRNA upstream 35189 18631412 ~ 18634243 (+) True LOC103027278
XM_022671441.1 mRNA upstream 418081 18215692 ~ 18251351 (+) True LOC111192973
XM_022671449.1 mRNA upstream 456356 18196755 ~ 18213076 (+) True LOC111192978
XM_022671422.1 mRNA upstream 476262 18176227 ~ 18193170 (+) True LOC107197388
XM_022671430.1 mRNA downstream 4141 18687257 ~ 18706546 (+) True LOC103035713
XM_022671432.1 mRNA downstream 4147 18687263 ~ 18706546 (+) False LOC103035713
XM_022671417.1 mRNA downstream 307401 18990517 ~ 19019268 (+) True LOC111192965
XM_022671183.1 mRNA downstream 493886 19177002 ~ 19178587 (+) True LOC111192912
XM_022671184.1 mRNA downstream 540093 19223209 ~ 19249152 (+) True LOC103045528
TU87714 other upstream 45933 18619860 ~ 18623499 (+) True G64990
TU87328 other upstream 950004 17690209 ~ 17719428 (+) False G64698
TU86972 other upstream 1781237 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other upstream 1793491 16873087 ~ 16875941 (+) True G64449
TU86961 other upstream 1804978 16833296 ~ 16864454 (+) False LOC103030423
TU87957 other downstream 593686 19276802 ~ 19278815 (+) False LOC103044219
TU87956 other downstream 597184 19280300 ~ 19340879 (+) True alyref
XR_002650196.1 other downstream 1097547 19780663 ~ 19794279 (+) False LOC103037311
TU88511 other downstream 2274019 20957135 ~ 20957635 (+) True G65565
TU88525 other downstream 2341059 21024175 ~ 21024574 (+) True G65575

Expression Profile