Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_022671415.1 |
| length | 2711 |
| RNA type | mRNA |
| GC content | 0.60 |
| exon number | 11 |
| gene id | LOC103042974 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_035903.1 |
| NCBI id | CM008306.1 |
| chromosome length | 40813162 |
| location | 17045514 ~ 17096825 (-) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0043547 | positive regulation of GTPase activity | biological_process |
| GO:0090244 | Wnt signaling pathway involved in somitogenesis | biological_process |
| GO:0038032 | termination of G protein-coupled receptor signaling pathway | biological_process |
| GO:0008219 | cell death | biological_process |
| GO:0090090 | negative regulation of canonical Wnt signaling pathway | biological_process |
| GO:0071407 | cellular response to organic cyclic compound | biological_process |
| GO:0009950 | dorsal/ventral axis specification | biological_process |
| GO:0045668 | negative regulation of osteoblast differentiation | biological_process |
| GO:0001957 | intramembranous ossification | biological_process |
| GO:0005881 | cytoplasmic microtubule | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005938 | cell cortex | cellular_component |
| GO:0014069 | postsynaptic density | cellular_component |
| GO:0005096 | GTPase activator activity | molecular_function |
| GO:0070016 | armadillo repeat domain binding | molecular_function |
| GO:0004871 | obsolete signal transducer activity | molecular_function |
| GO:0019901 | protein kinase binding | molecular_function |
| GO:0008013 | beta-catenin binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_002650194.1 | lncRNA | downstream | 4292 | 17039842 ~ 17042071 (-) | True | LOC111192963 |
| TU87055 | lncRNA | downstream | 93493 | 16952588 ~ 16952870 (-) | True | G64510 |
| TU87053 | lncRNA | downstream | 97575 | 16948589 ~ 16948788 (-) | True | G64508 |
| TU87050 | lncRNA | downstream | 140342 | 16905403 ~ 16906021 (-) | True | G64505 |
| TU87019 | lncRNA | downstream | 155580 | 16889102 ~ 16890783 (-) | False | G64485 |
| TU87206 | lncRNA | upstream | 48453 | 17145278 ~ 17145667 (-) | True | G64619 |
| TU87209 | lncRNA | upstream | 58781 | 17155606 ~ 17156047 (-) | True | G64622 |
| TU87219 | lncRNA | upstream | 75824 | 17172649 ~ 17173562 (-) | True | G64632 |
| TU87293 | lncRNA | upstream | 481972 | 17578797 ~ 17581592 (-) | False | G64682 |
| TU87295 | lncRNA | upstream | 482341 | 17579166 ~ 17581592 (-) | False | G64682 |
| XM_022671410.1 | mRNA | downstream | 100698 | 16895580 ~ 16945665 (-) | True | LOC103039070 |
| XM_022671411.1 | mRNA | downstream | 100918 | 16895580 ~ 16945445 (-) | False | LOC103039070 |
| XM_022671153.1 | mRNA | downstream | 339288 | 16696081 ~ 16707075 (-) | True | LOC111192875 |
| XM_007237943.3 | mRNA | downstream | 385856 | 16654113 ~ 16660507 (-) | True | LOC103027149 |
| XM_022671404.1 | mRNA | downstream | 483621 | 16529205 ~ 16562742 (-) | False | LOC103027662 |
| XM_022671176.1 | mRNA | upstream | 6470 | 17103295 ~ 17307076 (-) | True | cep112 |
| XM_022671179.1 | mRNA | upstream | 494876 | 17591701 ~ 17664561 (-) | False | LOC111192911 |
| XM_022671452.1 | mRNA | upstream | 585442 | 17682267 ~ 17689312 (-) | False | LOC103043390 |
| XM_022671180.1 | mRNA | upstream | 624304 | 17721129 ~ 17731699 (-) | True | stk19 |
| XM_022671442.1 | mRNA | upstream | 685927 | 17782752 ~ 17797809 (-) | True | LOC111192974 |
| TU87029 | other | downstream | 158460 | 16882335 ~ 16887903 (-) | False | G64492 |
| TU87032 | other | downstream | 158460 | 16882335 ~ 16887903 (-) | True | G64492 |
| TU87035 | other | downstream | 158460 | 16882335 ~ 16887903 (-) | False | G64492 |
| TU87037 | other | downstream | 158460 | 16883331 ~ 16887903 (-) | False | G64492 |
| TU86884 | other | downstream | 460716 | 16585065 ~ 16585647 (-) | True | G64387 |
| TU87262 | other | upstream | 438471 | 17535296 ~ 17597545 (-) | False | LOC111192911 |
| TU87264 | other | upstream | 490020 | 17586845 ~ 17597545 (-) | False | LOC111192911 |
| TU87266 | other | upstream | 490020 | 17586845 ~ 17597545 (-) | False | LOC111192911 |
| TU87272 | other | upstream | 490020 | 17586845 ~ 17597545 (-) | True | LOC111192911 |
| TU87274 | other | upstream | 490020 | 17586845 ~ 17597545 (-) | False | LOC111192911 |
