RNA id: XM_022671417.1


Basic Information

Item Value
RNA id XM_022671417.1
length 2333
RNA type mRNA
GC content 0.53
exon number 16
gene id LOC111192965
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18990517 ~ 19019268 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTACAGACGGACAGAATGCTGGATTAACTGGTGCTGCGAGATTAAACTGGATTAACTGGTGATCACAGATTAATTTACAGTTTAAGATCTGATACGCTGAGCTGCAGTCATGGTGCAGAAATATCAGTCCCCAGTCAGAGTCTACAAATACCCCTTCGAGCTCATAATAGCCGCCTATCAGAGAAGATTCCCCACCAGTCCACTCATCCCCATCTTTGTGCACAGTGATGTTATTAGTGAGAGCAGTAGTGAGGACGGGGCGACCCATGTGATCGAGCGAAGGTGCACTCTGGATGTGGACGCTCCTCGACTGCTGAAACGGATAGCAGGAGTGGAGTATCTGTACTTCGTTCAGAAGAACACTCTGGACCGGCAGCAGAGAACTCTGCATATTGAAGCTTATAATGAGAGTTTCTCCAGCAGAGTGATGGTCAGAGAACACTGCAGCTACACGGTGCATCCAGAGAATGAGGACTGGACGTGTTTTGAGCAGTCGGCCAGCATGGACATGAAGTCTTTCTTCGGCTTTGAGAGCACAGCTGAGAAGATCGCCATGAGGCAGTACGCTGCCAGCATTAAAAAGGGGAAGGAGATAGTTGAGTATTATCTGAGAGAGCTGGAGGAAGAGGGGATAACCTTTATCCCATGCTGGATCCCTCCTTCAACCAGCACCAAACCCAGTTCAGCCCGACCCGTCCCCACCAGCCGAGCCCCCGGCCGAGCCCACAGCAGCCCCGCCGACGCTCTACCAGCATCTCCAGAAGATAAGTTAGATGCAGACTATATCCGGCGCTATCTGGGGGAATTGAACCCTCTGCAGGAGAGCTGCCTGATCCGACTGAGACAGTGGCTGCAGGAAACTCACAAGGGAAAGCTTCCTAAAGACCAGCATGTCCTGCGCTTCCTGCGGTCCCGCGACTTTAACCTGGAGAAAGCTCGGGAGGCGCTGTGCCAGACGCTCACCTGGAGGAAGCAGCACCAGGTGGACTTCCTGCTGGATACGTGGGCGTGTCCTCAACTGCTGCACGACTACTACGCTGGGGGATGGCACCATCACGATAAGGATGGTCGTCCTCTCTATATCCTGAGGCTGGGACAGATGGACACTAAAGGTCTGGTTCGGGCTTTAGGAGAGGAGTGTCTCCTCAGACATGTTCTGTCCATTAATGAGGAGGGTCTCCGGCGCTGTGAGGAGAACACCAAGCTCTTCGGTCGACCAATCAGctgctgGTCGTGTGTGGTGGATCTGGAGGGGTTAAATATGAGGCACTTGTGGAGGCCGGGGGTTAAAGCTCTGCTGAGGATTATTGAGGTGGTGGAGGTGAATTATCCCGAGACTCTGGGGCGGCTCCTGATCCTGAGAGCTCCCCGGGTTTTCCCCGTCCTCTGGACTCTGATCAGTCCGTTTATTGATGAGAACACCCGCAGGAAGTTCCTGATCTACGCAGGAAATGATTATCAGAGCTCGGGGGGGCTGCTGGATTAtatcagctcagagttcatcCCGGATTTCCTCGGGGGAGACGCTCAGTGTGACGTCCCCGAGGGCGGACTCGTCCCCAAGACGTTATATCACACCGCCGAGGAGCAGGAGAACCAAGAGCTCAAACTCTTCACGGATACAATCTACAAAACCGCCAGCGTGTTTAAAGGAGCTCCGCACGAGCTGCTGGTTGAGATCACGGAGTGCTCGTCTGTGATCACGTGGGATTTCGACGTGGTGAGAGGAGATATCATCTTCAGCATCTTCCACTCTAAACGAGCTCCTCAGCCTCCCAGGAGAGAGACCCTGCCCGGGCTGGGCGGGAACAACCAGCAGGTGATTGACAGGTCCTGGACACTGGGGCAGGACTTCAGCATGGTGGAAACGGCCCTAATCTGTAGAGAAGGAGAGAGTATACAGGGTTCTCATGTGACCCGCTGGCCCGGGTTCTATATTCTGCAGTGGCGTTTCCACAACACCCCGTCCTGCTCTGCGTCCACCCTGTCCCGAGTGGACGATGTCCTGGCCTCGCTGCAGGTCTCCTCCCACAAGTGCAAGATCATGTTCTACACCGAAGTGCTGCAATCCGCTGACTTCAGGGGTTCTATGAGCAGTCTGGCCTCCAGTCACAGTGGTTTCTCTCAGCTCAGTGGTgccaccacctcctccacccGCTCCAACTGCAGCTCCATCACCTCCAGATAGATCAGAAACACACGACCTGCCCTTTAATTACTCCCAAAAACCCCTAAACCCCTTAccttacacactgcacacagaatatttacatttatagatGTAATTCTAACATAAACCCAGATCATCTGTGTATTAAATCCACAAAAGTCA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87898 lncRNA upstream 81831 18901452 ~ 18908686 (+) True G65116
TU87784 lncRNA upstream 149953 18792182 ~ 18840564 (+) True G65044
TU87794 lncRNA upstream 155663 18833959 ~ 18834854 (+) True G65053
TU87758 lncRNA upstream 231225 18711614 ~ 18759292 (+) True G65019
TU87738 lncRNA upstream 256367 18654778 ~ 18734150 (+) True G65011
TU87907 lncRNA downstream 12137 19031405 ~ 19032751 (+) False G65122
TU87934 lncRNA downstream 143301 19162569 ~ 19162918 (+) True G65144
TU87943 lncRNA downstream 204746 19224014 ~ 19278071 (+) False LOC103045528
TU87944 lncRNA downstream 204746 19224014 ~ 19224592 (+) False LOC103045528
TU87937 lncRNA downstream 228263 19247531 ~ 19250161 (+) False G65145
XM_022671430.1 mRNA upstream 283971 18687257 ~ 18706546 (+) True LOC103035713
XM_022671432.1 mRNA upstream 283971 18687263 ~ 18706546 (+) False LOC103035713
XM_022671412.1 mRNA upstream 307401 18669432 ~ 18683116 (+) True LOC107197347
XM_022671439.1 mRNA upstream 321083 18657276 ~ 18669434 (+) True LOC111192972
XM_022671448.1 mRNA upstream 335828 18652128 ~ 18654689 (+) True LOC111192977
XM_022671183.1 mRNA downstream 157734 19177002 ~ 19178587 (+) True LOC111192912
XM_022671184.1 mRNA downstream 203941 19223209 ~ 19249152 (+) True LOC103045528
XM_022671456.1 mRNA downstream 249154 19268422 ~ 19271847 (+) True LOC103043906
XM_022671461.1 mRNA downstream 257736 19277004 ~ 19279517 (+) True LOC103044219
XM_007241718.3 mRNA downstream 261024 19280292 ~ 19284033 (+) False alyref
TU87714 other upstream 367018 18619860 ~ 18623499 (+) True G64990
TU87328 other upstream 1271089 17690209 ~ 17719428 (+) False G64698
TU86972 other upstream 2102322 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other upstream 2114576 16873087 ~ 16875941 (+) True G64449
TU86961 other upstream 2126063 16833296 ~ 16864454 (+) False LOC103030423
TU87957 other downstream 257534 19276802 ~ 19278815 (+) False LOC103044219
TU87956 other downstream 261032 19280300 ~ 19340879 (+) True alyref
XR_002650196.1 other downstream 761395 19780663 ~ 19794279 (+) False LOC103037311
TU88511 other downstream 1937867 20957135 ~ 20957635 (+) True G65565
TU88525 other downstream 2004907 21024175 ~ 21024574 (+) True G65575

Expression Profile