RNA id: XM_022671418.1


Basic Information

Item Value
RNA id XM_022671418.1
length 2252
RNA type mRNA
GC content 0.54
exon number 8
gene id otop2
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17860217 ~ 17879272 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGAGAAAATATTCCCATCACTAGAGGAGCAGCGAGAGACACTGCTGTAGGTAAACTAACAGTAAAGAGATCAGAAGTCTGGTAGAGGTTGTATCAGGTACAGTACTGTGGACGTCTCCTGCAGACTGGTCTCACCATGAGTCAGGACGGTCACTCCGGCGTAGCATCCGGTATGAATCAAGAAACACACGCCAGCATACTGTCCAGCCTCTACGGCATGGAAATAGAGACGGGGAAGAAGGACGAGGCGGATGGAGTCCAATACATCTCCACCATCCACTCCCCGTACCGCGGGCAGCGCTCCGCCAGCGTGGCACTGTCCTCCATCAGCACCTGGAGGGACCGGGCGGGCAGCTGGGGCTGGGTACTCTCCGCCTTCATCCTCATCAACGTGCTGATCCTGGGCAGCGCCTTCGTCAGCGGGAGCGTCTTCAACGGCGTCCACgtcaccaacacacacctgcagATCTTCCTCCTCGTCATCATCGTCCCCACCACCGTCTGGATGCTCTTCTACAAGGCCTACACCTGCCGCGGGGAGGAGGCCGTGCTCTACAAGGACGTGCACGCTGGACCCGTGTGGCTCAGAGGTGGTCTGGTGCTGTTTGGGGTCTGCAGCTTAATTATGGACGTTTTTAAAATTGCCTACTATGTGGGTTATACACACTGCCAGTCTCCGGTAAAGATCGTCTTCCCTGTGGTGCAGGCTGTCTTTATACTGGTGCagACATACTTTCTCTGGCTTCATGCAAAGGACTGTGTTCAGGTTCAGAGGAACGTAACTCGCTGTGGGCTGATGCTCACTCTGGCTACTAATCTGATGCTGTGGATGACGGCGGTTACAGAAGAGTCGCTGCATCAGACGGTTTATCCTGACGGCACCAATCAGACCTCCCGAACTCTTCTGCTCAGAGcggCGGCGTCTGACGGCGACAGCAGCTGCCAGTGTAGCCACACCTCCTGCAGCATCTTCGAGCAAGCCTACTACTACCTGTACCCCTTCAACATCGAGTACAGCCTGTTCGCCTCAGCCATGACCTACGTGATGTGGAGGAACGTGGGTCGGCTGGTGGACGATCACCCCGCCCACGAGCACCGCTTCCACCTGCGAGACGTCCTGCTGGGGCCGGCTGGCGGCCTGGTGGTGCTGGTGGCCGGTCTGGCCACTTTCGTCGTCTATGAGGTGGACGTGTCTTCAGGAGACCAGGAGAAGCGAGACACGGCGCTGACCTTGTACTACATAACCAACACGGTGACCATCGCTCTGATGACCATGGTCACGGTGGCCGGATGCGTGATCTACCGGCTGGAGCGGCGTGAACACGCCTCGGGGAAGAACCCCACCCGCAGTCTGGACATGGGGCTGCTGGTGGGCTCCTCCATGGGTCAGTTCACGGTCTCCTACTTCACCGTCGTCGCAGTACTGGGCACCGGAGTGGACGGCCACGTCAACGCCCTCAACCTGGCGTGGTCGGTGATAACCCTGCTGGAGCTCTGCGTGCAGAACGTCTTCATCATCGAGGGAATCCGGCGCGAGCCTCACCACGACGTGCGCCGGGCGAGCATCTTCTCCAACCTGCTGGCCCTCCACGCGCAGGAGGACCGGCGATCCAGCCACGTCCCCACGTCCCCCCGCGGCTCCATCGCCATCCCCGTCCACAAACCCCTGCCCTGGAAGAGGAAGATCCTGAAGGAGATCGCCGCCTTCCTGCTGCTGTCCAACATCATCcttTGGATCATGCCAGCGTTCGGGGCGCGCCCGCAGTTCGACAACCCCATCGGAACAGAGTTCTACCAGTTTAACATGTGGGTTGCCGTGGTGAACGTCGGGTTGCCGTTTTCGATCTTCTACAGGATGCACTCAGTAGCCAGTCTGTTCGAGGTGTACCTCACCTCATGAACCCACAGCATGGAGATCTGTTTTATAGTGAACACAGTGGagaaatagtttataaatggattattatttttatagtattttgttttgcatttgtttcttttgtgtttctttgtcttttatACTCGGCACCTGAATGAACTGCTGCacagttgtgtttgtgtgtgtgtgtgtgtactgtatgtttgtgtgtgtgtatatatctatatgtaCTTTTTATACAGATTGATTATGTACAgcttaaaatattgtatgtaattattattattattattatttgcacaaatatgtTGACAGATGAAGCTTTTGCCCTCATTGTGTTTGAGGGAATTGGCTATTATAAGCaacatgaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87358 lncRNA upstream 44489 17769247 ~ 17815728 (+) True G64710
TU87357 lncRNA upstream 44568 17780682 ~ 17815649 (+) False G64709
TU87352 lncRNA upstream 47533 17780682 ~ 17812684 (+) True G64709
TU87355 lncRNA upstream 47533 17781520 ~ 17812684 (+) False G64709
TU87329 lncRNA upstream 140305 17716918 ~ 17719912 (+) True G64698
TU87407 lncRNA downstream 78341 17957613 ~ 18008671 (+) True G64753
TU87408 lncRNA downstream 93307 17972579 ~ 18061330 (+) True G64754
TU87425 lncRNA downstream 120103 17999375 ~ 18000064 (+) True G64760
TU87429 lncRNA downstream 127882 18007154 ~ 18008138 (+) True G64763
TU87430 lncRNA downstream 133209 18012481 ~ 18348193 (+) True G64764
XM_007242882.2 mRNA upstream 54391 17804284 ~ 17805826 (+) True amn
XM_022671427.1 mRNA upstream 79625 17768928 ~ 17780592 (+) True LOC111192968
XM_022671434.1 mRNA upstream 96096 17748628 ~ 17764121 (+) True LOC111192970
XM_022671428.1 mRNA upstream 114444 17732094 ~ 17745773 (+) True LOC107197389
XM_022671429.1 mRNA upstream 114444 17732094 ~ 17745773 (+) False LOC107197389
XM_022671451.1 mRNA downstream 45074 17924346 ~ 17929849 (+) True LOC111192979
XM_022671181.1 mRNA downstream 105693 17984965 ~ 18132010 (+) True LOC103040205
XM_022671423.1 mRNA downstream 281800 18161072 ~ 18172237 (+) True LOC103030006
XM_022671422.1 mRNA downstream 296955 18176227 ~ 18193170 (+) True LOC107197388
XM_022671449.1 mRNA downstream 317483 18196755 ~ 18213076 (+) True LOC111192978
TU87328 other upstream 140789 17690209 ~ 17719428 (+) False G64698
TU86972 other upstream 972022 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other upstream 984276 16873087 ~ 16875941 (+) True G64449
TU86961 other upstream 995763 16833296 ~ 16864454 (+) False LOC103030423
TU86945 other upstream 1106657 16753043 ~ 16753560 (+) True G64431
TU87714 other downstream 740588 18619860 ~ 18623499 (+) True G64990
TU87957 other downstream 1397530 19276802 ~ 19278815 (+) False LOC103044219
TU87956 other downstream 1401028 19280300 ~ 19340879 (+) True alyref
XR_002650196.1 other downstream 1901391 19780663 ~ 19794279 (+) False LOC103037311
TU88511 other downstream 3077863 20957135 ~ 20957635 (+) True G65565

Expression Profile