RNA id: XM_022671421.1


Basic Information

Item Value
RNA id XM_022671421.1
length 2399
RNA type mRNA
GC content 0.50
exon number 7
gene id LOC111192966
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17807074 ~ 17817082 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cttttgcaattaggtcaatgtaaaaGACACTGCGCTTAATAATAACAGgtattttagttagttttaagttattttatgtgcacatttatacatgtaatttcctggggacagaaatgttAAAACAATGTACTGTTAAAACAAGGTCATTCCTAACAGAGACAGATATGGGTTGCCATGTCTTACGCAAGATACGAGGAATGCAGTTCGAGAGGGGCAAAATGAATCACATGACTCCATTCCAGTCCATTACCTTTGTTATGACTTTATCTGGATTATGGTTTTCCGTGCTCTCTGGGTTGCTAATACGTATTTGCCTTGGCTGCTCCCTCTGTTCTGACTGCCAGCCGGGGAGGAGTATCGGCGCTCAGCTGACCCTTACACTAGGTGTGGCCTGCAGCAAGTCAAACAACTCAAACAACTCAACAACTGCATTGTGCAAACCGGTTTCCCTGAAAGAGAAGTAGGTCTGAGGGAAGGAGAAGAGTTGGAGCTTCCAAACTGCTGGAAACAACTAAAATTCAGCttaaaattcagaaaaaagCTTCAGAACTCCTTTAGACCCAACAGGGTTTATTAGAATGGAGAACACGGAAGAGGGCATCTCACCCAAAAAGATGCCAGAGGGCATCCAGCCTGGCATGGAGAACCACCAAGAAGAAACCAACCTGGCTCCAGAATCCAAAGATCCCAAAGAAGAGGCAACAAAAtcccaagaagaagaagaagaagatcagATAGATGCTTGTAATGGTACCACCAACGCTTCCACCAATGGTACCACCAATTCCCCCACCGATCCACCAACTGTGGAAGTGACCTGCGACTCCTGCATGGAGAACCCTCGCCCGGCCTCCAAGTCCTGCCTCACCTGCCAGGTGTCCTACTGTGAGGAGCACCTGAGGCCTCACCTGGAGAACAGCAAGTTCCAGACCCACAAGCTGGTGGAGCCACAGCTGGACATGGAGCTGCGCACCTGCCCGCATCACCACCTGGACCTGGAGCTGTACTGCACCACCGACAGCCGCTGCATCTGCGCCAGCTGTGGAAGCGAAGGGCACCACGGGCACAGCATCGTACCCATAGGAGAGGCCCGCAAGCAGATAGAGGGAGATCTCcagcagaaacagaaagagatggTGAAGAAGTTGTCTGCAGCGGAGCAGGCCATCACCAAACTGCAGGGAAACACAGAGTCCATAGAGAGCTCTGTGACGGGGGTACGAGCTGAGATCGAGCAGCAGTTCTCAGATCTGCAGGCGGCGGTGGAGGACGCTCAGAAGAGCACGCTGGATGTTCTGGAGGGGGAGTATAAACAGGCCCTGGGTCAGGCGGAGAGCATCCAGGCCCACATCGAGCAGAGGATCACTGAGCTGAAGAAGACCATGGCCCAGGTGGAGCGACTTCCTCGGAAAAAGAACGATGTGGATTTTCTGCAGGAATACACAGAGTGGAGGAAAGGTTTGGTGGACGTTTGTTTACCAGGGGTTTACATCAGCCTCATAGACCAGCTGGACACTTTCAGCCGAATCGTGAAAGAAACCACTAAAAACCTGTGTGAGCAGCTGACGTCCACCTACAGCGCTCAGCTTAAAGAGCTCTGTGAGAGCGAGAAACTGAGCATTAAGACGATGGTGCAGCCGAGCTCCCCGACCAAACGCCAGTCATCCGAACAGGAGCCCGTAACTAGAGAAGACTTCCTTAAATACGCCTCCAATCTGACCTTCAATCCTGACTCCACCCACAAATTTCTGAGGCTAACTGAGGACAACAGAAAAGCGAGTAACACCACGCCCTGGCAGCACAACTACCCGGATACACCGGACCGATTCGAGCACTGGCGGCAGGTGATGACCTGCGAGAGCCTTTACCTGGGCCGCCATTACTTTGAGGTGGAGCTAACAGGTGAGGGGGCGTACCTGGGCCTCACCTACAAGAGCATCGAACGCAAAGGCCAGGAGAGCAGCAGCTGCATCACCGGTAACGATTTCTCCTAGCTTCGGCGGGAAAGCCACGGCTACTCGGCCTGGCACTGCGACGCGGAGACGCCGGTGGAGGTGGGCGAGTTTTCTCGGATCGGACTCTACATGGACTACGAGAAGGGTCTGCTGGCCTTCTACGGTGTGGACGACACCATGAACCTGCTACACATGTTCACCACTAATTATCTAGAACCACTGTACCCTGTGTTCTGGCTCTCCAAGAAAGACAATAAAGTGGTTCTAGTCAAGCCGGGTGACTaaatttaatatcacaatagcataacaatagtttttttttatagcaatgTTATTGTTGTAGAGCCAAGCACAACAATAGTGATGAATGATAATAAACATATTCattattcagaggtgaaaatgtataaaaaattaataaatgtgtttaaaataatttgcgAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K12006 TRIM16; tripartite motif-containing protein 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87520 lncRNA downstream 87163 17690229 ~ 17719911 (-) True G64835
TU87521 lncRNA downstream 87163 17699106 ~ 17719911 (-) False G64835
TU87528 lncRNA downstream 91632 17707996 ~ 17715442 (-) True G64841
TU87312 lncRNA downstream 117787 17678814 ~ 17689287 (-) True LOC103043390
TU87316 lncRNA downstream 128409 17677897 ~ 17678665 (-) False G64692
TU87582 lncRNA upstream 63368 17880450 ~ 17882420 (-) True G64882
TU87601 lncRNA upstream 160465 17977547 ~ 17978089 (-) False G64898
TU87602 lncRNA upstream 160673 17977755 ~ 17978089 (-) True G64898
TU87606 lncRNA upstream 182474 17999556 ~ 17999808 (-) True G64902
TU87608 lncRNA upstream 206992 18024074 ~ 18024657 (-) True G64904
XM_022671442.1 mRNA downstream 9265 17782752 ~ 17797809 (-) True LOC111192974
XM_022671180.1 mRNA downstream 75375 17721129 ~ 17731699 (-) True stk19
XM_022671452.1 mRNA downstream 117762 17682267 ~ 17689312 (-) False LOC103043390
XM_022671179.1 mRNA downstream 142513 17591701 ~ 17664561 (-) False LOC111192911
XM_022671176.1 mRNA downstream 499998 17103295 ~ 17307076 (-) True cep112
XM_022671424.1 mRNA upstream 23097 17840179 ~ 17855162 (-) True ush1g
XM_022671425.1 mRNA upstream 24894 17841976 ~ 17855162 (-) False ush1g
XM_022671454.1 mRNA upstream 67538 17884620 ~ 17920811 (-) True hid1
XM_007243061.3 mRNA upstream 536251 18353333 ~ 18356495 (-) False LOC103047157
XM_007243060.3 mRNA upstream 536251 18353333 ~ 18356495 (-) True LOC103047157
TU87272 other downstream 209529 17586845 ~ 17597545 (-) True LOC111192911
TU87588 other upstream 111425 17928507 ~ 17931170 (-) True G64886
TU87843 other upstream 826289 18643371 ~ 18650343 (-) False LOC111192971
TU88001 other upstream 1081103 18898185 ~ 18919522 (-) False G65184
TU88002 other upstream 1081103 18898185 ~ 19023658 (-) True G65184
TU88053 other upstream 1463220 19280302 ~ 19284032 (-) True G65231

Expression Profile