RNA id: XM_022671422.1


Basic Information

Item Value
RNA id XM_022671422.1
length 2255
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC107197388
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18176227 ~ 18193170 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCACCTCCTTGACTTCTTCCTCATTGCTTTACACTGGAAACGAAACGAAACAGAAAGTGTTTTCTGATTGCTGGtctgtgtaggagtgtgtgtaaaATGGCTAAAGCCCCGACAAAAGATCAGGATTCCTTCAGCTGTCCGATCTGCCTGGACCTGCTAAAGGAGCCGGTGACCATTCCCTGTGGGCACAGCTACTGCATGAGCTGCATTCAGCACTGCTGGAAAGAGGACCAGCACCCGGACAGCGTCTACAGCTGCCCCCAGTGCAGACAGGCCTTCTCCCCAAGACCCGCCCTCAACAAGAGCACCATCATCGCCGAAATGATGGAGAAAATGAAGAACGCCGGACTCCTGACCGCGCCGGCGGCTCCGCGAGGCACAGGCGAGGTGTCGTGTGATGTCTGCGTTGGTACAAAGCTCCAGGCCGTGAAGTCCTGCCTGGTGTGCCTCGCCTCGTACTGCGAAACTCACCTCAGGCCTCACTATCAGTCACCTGCCTTTCAGAAGTACACGCTGGTCTCAGCCTCCacccagctccagcagcagatCTGCCCACATCACAGCAAACTGCTGGAGGCGTACTGCCGCACTGACCGCCGCTGCGTCTGCATGCTGTGCATCCTGGACGAACACAAGGGGCATGAAGTTGTTTCTGCTGCCAAAGAAATGGGCGAAAAACAGAAACAGCTGATTGATACTCAAAGCAAGTTCAAGCAGCAgattaaagaaagagagaaggagctTCAGGAGCTGAAAGAAGCTGTACAGTCTTTTAAGCTCAGTACACAGGCTGCAGTGCAGGACAGTGAGCGGATTTTCTCTGAGTTGATTCGATCCATTGAGAAGACTCGCTCTGAGGTGACGCAGCTGATTCGAGCCCGGGAGAAGGCAGTGGTGAGCCGGGCTGAAGAACTGCTGGTGTGGTTGGAGCAGGAGATCACTGAGCTGAGGGGGAAAGACAATGAGCTGGAGGAGCTTTTACACACAGAGAATCATATCTATACACTACAGAGAATACCAGCTCTCTGTGCTCCGCCTGGCTCTGCAGAACTTCCCAGCATCACCATCAACCAGCTTTATACCTTTACTGACGTGCTGAAGTGTGTGTCTGAGCTGAGAGAGAGGCTGGAGGATCTGTGTAAGCAAGACGTCGTCAAGATATCCAGAGAAGTTAATGCTGTCGCTATTACAGAACCTCTTACCAGAGAAGACCTGCTACAATACTCTTGCCAGCTCACCCTGGACCCCAGTACAGCGCACCGGCAGCTCTGCCTGACTGAGGGGAACACTAGGGGGCGCTATACGAGTGTCCGTCAGGCCTACCCTGACGATCCCGGGCGGTTCGATAAGAACGCTCAGGTGCTGTGCTGTGAGGGTTTGATGGGGCGGAGCTACTGGGAGGTGGAGCTGGACAGGAAAGATGGACTCACCGTAGCGGTGTCGTATAAAAGCATCAGCAGGAAGGGGTGGGGCTACGATGTGACGTTCGGATGCGATCAGCAGTCCTGGAGACTCGACTGCTCGGCCGGAGGTTTTTTTTCTggcacaataataaaaaaattaatattccTGCAGCTGGAGGCGGATCTAAAGTCGGAGTGTACCTGGATCACAGAGCCGGAGCTCTTAGCTTCTACAGCATCACCGAACCAATCGTCCTCCTCCATAAAGTTACAGCCGTGTTCAATCAGCCGCTCTATCCGGGGTTTGGATTCGGTTATTATGAATCAGCTGTTAAAATTTGTGACTTAAAATAAGATCAGGGTCATCGATAACCCATAAACTCCCCTAAAAGTTCAAGcaaaatgttgtgttttgttgtttttaaatagaaactaaaaaaagtatCATTACATTGTCATTCTTTATTGAGCATGAGAACAGTATACATCTCTGTATACTCTAATACTCTGAAAATCATTTTCTAACTTAAAATGCTATGTTATCTGTTAGTTTATCATTTAAATTTGGCCCTAGATTACGTTTTCTGTTgtaaaatactctaaattagTTGGATTCAATGTAGCATCcgaatatttaatacaaattagtaaagcacattaaaaacacatcacTTTCTACACACTGATGTTGTGTAGGAAAAAGTTGTCAATATGcgcttttaatattttttgtgcaACTCTGTCGTTACCACCTCTGTCCTCACATAATTATGGACATCtgcttttaaattatttcacatggaaaaaataagagcgcttaaaaatgataaattcctttgattttaccaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87443 lncRNA upstream 52328 18114974 ~ 18123899 (+) True G64776
TU87408 lncRNA upstream 114897 17972579 ~ 18061330 (+) True G64754
TU87437 lncRNA upstream 124984 18050049 ~ 18051243 (+) True G64770
TU87433 lncRNA upstream 147472 18028086 ~ 18028755 (+) True G64766
TU87407 lncRNA upstream 167556 17957613 ~ 18008671 (+) True G64753
TU87457 lncRNA downstream 5826 18198996 ~ 18230483 (+) True G64787
TU87464 lncRNA downstream 73069 18266239 ~ 18329102 (+) False G64792
TU87465 lncRNA downstream 73069 18266239 ~ 18329102 (+) True G64792
TU87472 lncRNA downstream 113735 18306905 ~ 18384819 (+) True G64794
TU87477 lncRNA downstream 141346 18334516 ~ 18355513 (+) True G64797
XM_022671423.1 mRNA upstream 3990 18161072 ~ 18172237 (+) True LOC103030006
XM_022671181.1 mRNA upstream 44217 17984965 ~ 18132010 (+) True LOC103040205
XM_022671451.1 mRNA upstream 246378 17924346 ~ 17929849 (+) True LOC111192979
XM_022671418.1 mRNA upstream 296955 17860217 ~ 17879272 (+) True otop2
XM_007242882.2 mRNA upstream 370401 17804284 ~ 17805826 (+) True amn
XM_022671449.1 mRNA downstream 3585 18196755 ~ 18213076 (+) True LOC111192978
XM_022671441.1 mRNA downstream 22522 18215692 ~ 18251351 (+) True LOC111192973
XM_022671438.1 mRNA downstream 438242 18631412 ~ 18634243 (+) True LOC103027278
XM_022671448.1 mRNA downstream 458958 18652128 ~ 18654689 (+) True LOC111192977
XM_022671439.1 mRNA downstream 464106 18657276 ~ 18669434 (+) True LOC111192972
TU87328 other upstream 456799 17690209 ~ 17719428 (+) False G64698
TU86972 other upstream 1288032 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other upstream 1300286 16873087 ~ 16875941 (+) True G64449
TU86961 other upstream 1311773 16833296 ~ 16864454 (+) False LOC103030423
TU86945 other upstream 1422667 16753043 ~ 16753560 (+) True G64431
TU87714 other downstream 426690 18619860 ~ 18623499 (+) True G64990
TU87957 other downstream 1083632 19276802 ~ 19278815 (+) False LOC103044219
TU87956 other downstream 1087130 19280300 ~ 19340879 (+) True alyref
XR_002650196.1 other downstream 1587493 19780663 ~ 19794279 (+) False LOC103037311
TU88511 other downstream 2763965 20957135 ~ 20957635 (+) True G65565

Expression Profile