RNA id: XM_022671425.1


Basic Information

Item Value
RNA id XM_022671425.1
length 1529
RNA type mRNA
GC content 0.62
exon number 3
gene id ush1g
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17840179 ~ 17855162 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGAGAATGTCGCGCGCGGCGCTCGAGCGCAGGGCCGCCGGTTTCCGGCCCGCCGCCGCGGACGGAGAGTGACGGACCCCGCAGGATGGAGGCTGAGGTCCGGGAGCACCATGAATGATAAGTACCACAGGGCGGCTCGGGACGGGTACCTGGACCTGCTGAAGGAGGCCACGCGGAAGGACCTGAACGCACCTGATGAAGATGGCATGACCCCCACCCTGTGGGCGGCGTACCACGGGAACCTGGACGCGCTCAGACTCATAGTGGCGAGAGGAGGGAACCCTGATAAGTGTGACATATGGGGGAACACACCGCTTCACCTTTCTGCTGCCAATGGCCATCTCAACTGCCTGTCCTTCCTGGTGTCGTTCGGCGCCAACACCTGGTGCCTGGACAACGACTACCACACGCCGCTGGACATGGCCGCCACCAAGAACCACATGGACTGCGTACGGTACCTGGACTCCATCGCCGCCAAGCAGACGGCCCTCAACCCCAAGCTGGTGGCCAAACTGAAGGACCGGGCCTTCCGGGACGCCGAGCGGCGCATCAAAGACTGCGTGAAAATGCAGCGCAAGCATCACCGCCGCATGGAGCGCAAGTTCCAGAAGGAGGCCACCGAGGCGTCCGTGTCTGATGCCATGAGCTTCTccagctacagcagcagcacccTGAGCCGCAAGCTGCACCACTTCAACACTGCCACCAGCGTGCCATACTCACAGGCTACTCTCCACGCCACGACCAGAGGCAAAACGAAGATTCAGAAGAGGCTGGAGAAGAAGAAGCAGGGCGACGGGACCTTCAAGATCTACGAGGACGGCAGGAAGAGCGTTCGCTCGCTTTCCGGCCTGCAGCTTGGGAACGACGTGATGTTCCTGAAGCAGGGAACCTACGTCAACCCCAAGGAGCGCGGCCGGCGCAACATCCGGGACATGTTCCCGCGGGACGAGGATGCCGTCTCGCGTGCCATCAGCGAGCCGGACCTGCACGGCGTGGATGTGGATTATTCTGAGATCAGCACGGACTCGGGTCACGACTCGCTCTTTAACCGGCCGGGTCTGGGCACCATGGTCTTCCGACGCAACTACGTGAGCGGCGGCCTGTTCGGTATCGGCGCCCGGGACGAGGGAAGCATTGTCAGTAGCGGACGAGCCCCCAACGTTCGCCTGCGCAGTCGCCTGCAGCGCTCCCCCAGTCTGGACGAGGACAGTATCGGCAGTGCACGGAGTCTCCAGGACCGGAACGTGGAGGAGCTTCCCTGGGACGAGGTGGAGCTGGGTCTGGACGATGACGACGAGCCGGAGAGTAACCCGCTGGAAGTGTTCCTGGCCACTCAGAGCATGCACGAGTTCATCCCCATCTTTAAGAGGGAGAAGATTGACCTGGAAGCGCTGCTGCTGTGCTCGGACGACGACCTCAAGAGCATCCACATCCCCCTCGGACCCCGCAAGAAGATCCTCGATGCCTGCCAGCGACGCCTGGAGACCATCGATGATCCGGAATACATAGAGGATACAGCGCTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87545 lncRNA downstream 26248 17769247 ~ 17815728 (-) True G64857
TU87520 lncRNA downstream 122065 17690229 ~ 17719911 (-) True G64835
TU87521 lncRNA downstream 122065 17699106 ~ 17719911 (-) False G64835
TU87528 lncRNA downstream 126534 17707996 ~ 17715442 (-) True G64841
TU87312 lncRNA downstream 152689 17678814 ~ 17689287 (-) True LOC103043390
TU87582 lncRNA upstream 25288 17880450 ~ 17882420 (-) True G64882
TU87601 lncRNA upstream 122385 17977547 ~ 17978089 (-) False G64898
TU87602 lncRNA upstream 122593 17977755 ~ 17978089 (-) True G64898
TU87606 lncRNA upstream 144394 17999556 ~ 17999808 (-) True G64902
TU87608 lncRNA upstream 168912 18024074 ~ 18024657 (-) True G64904
XM_022671421.1 mRNA downstream 24894 17807074 ~ 17817082 (-) True LOC111192966
XM_022671442.1 mRNA downstream 44167 17782752 ~ 17797809 (-) True LOC111192974
XM_022671180.1 mRNA downstream 110277 17721129 ~ 17731699 (-) True stk19
XM_022671452.1 mRNA downstream 152664 17682267 ~ 17689312 (-) False LOC103043390
XM_022671179.1 mRNA downstream 177415 17591701 ~ 17664561 (-) False LOC111192911
XM_022671454.1 mRNA upstream 29458 17884620 ~ 17920811 (-) True hid1
XM_007243061.3 mRNA upstream 498171 18353333 ~ 18356495 (-) False LOC103047157
XM_007243060.3 mRNA upstream 498171 18353333 ~ 18356495 (-) True LOC103047157
XM_022671182.1 mRNA upstream 634490 18489652 ~ 18536743 (-) True LOC103034879
XM_022671440.1 mRNA upstream 683741 18538903 ~ 18550973 (-) True LOC103028836
TU87272 other downstream 244431 17586845 ~ 17597545 (-) True LOC111192911
TU87588 other upstream 73345 17928507 ~ 17931170 (-) True G64886
TU87843 other upstream 788209 18643371 ~ 18650343 (-) False LOC111192971
TU88001 other upstream 1043023 18898185 ~ 18919522 (-) False G65184
TU88002 other upstream 1043023 18898185 ~ 19023658 (-) True G65184
TU88053 other upstream 1425140 19280302 ~ 19284032 (-) True G65231

Expression Profile