RNA id: XM_022671429.1


Basic Information

Item Value
RNA id XM_022671429.1
length 1475
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC107197389
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17732094 ~ 17745773 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taatttattttattttaaaaagctgcctattttagtgtgtttttttatttctacagaAGATCAGGATGATGTCCACGCAAAGGATTAtcaaatatttcaatattttatattcctTAATTGTGTTGATTGGATCGTCTGCAGCTTGTGAATCTCGGCGTTGTCTGGCTGAAGAGTTTATTAAGAGGAAACTGTACAGTTCTCCTCAGCCTCCGGAGTGTGTGGTTAACGTGAATCTCACATCCATCCAGTATCAGACTCTCTCTGTCGAGTGGAACGACCCAGATCTTGCCTGGTCAGACTCACAGTACACGTTTGATGAAATCATGCTGCCATTTAATAAGATCTGGACTCCTGACCTCAGCGTGGACAATGCGGTATACCTGGACGTGAAGCCCGTCTCTAATGATATACTGGTGAAGCAGGACGGCACTGTGAACTACGCCATCCTCATGTACTCCACGGTCGTGTGTGGGATCAATCTCTTCACCTATCCTTTTGTTCAGGGTGAATGTCCTGTAGCCATCAATGGATGGAATCAAAGCTCCTGTGGCCTGCAGCTGGAGTACGGCTCGCTGTATTTTGTGGGAGGAGATCGAGGGGAGTGGCAGACCGTGTCTGTAGAACTTTATAAGAACCAAGCTGATGATAATCACAACTATCTTCAGGTCAGCATGTCCATTAACCCGTTTAACGCCCTGGTGTCCCTGGTCCTGCCCAGTGCGCTGATCATGCTGGCTGATCTGGTGAGTTTCGCTCTGCCGCTGGAAGGAGGAAGGCGCAGCTCCTTTAAAATCACGCTGGTGCTGAGCTTCACCATGttcctcctcatcctcaccaACCACCTGCCCAGCGGCGAACACTGCAACCCTCTGATACgttatcacttctgtttctgtctgttcGTGCTGGTGCTCAGTATGCTGATGTCGATGGTGTTCACAAAGCTGGCAGCAGATGGCACCATCAACCCATTCAAACTCCAAAAGATGCCCAGATCAGATCTCAGTGTGAACTGTGCCGTAACGAAATCATCCGCCCTGAACAAAGAGGAGGATTCTCTGGAGAAGATCGGGAGTTTTTTGGAGAACATGGATAAAGAGGAGAAGATGATGAAGGAGAGGCAGATCTACACAAACAATCTGGATAAAATCTGCCTGTGGATTTATTTAATCCTCGATATCGTCTACAGTTTATGTATTCTCATTTTAACTAGAACAGCGATGTGTAACTTTAATAATCTTGATTTCTGGAACTAATTCACTGCAGTTCTTCTTCTATGGGCTGTTTACTATCAAACACATGTACAAACACATAGCACATCTAAATCTCTCTAAATATACCATGGTTttatgatatactgtatattgtatgtttttacaGACATTGTCTACAAAACTGTATTTGACAGTGATATTTCAGCAGATACTGTTGCTAatttttatcataattttattaaaaatactttttatttcacA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87329 lncRNA upstream 12182 17716918 ~ 17719912 (+) True G64698
TU87330 lncRNA upstream 12666 17717468 ~ 17719428 (+) False G64698
TU87324 lncRNA upstream 16919 17690209 ~ 17715175 (+) False G64698
TU87170 lncRNA upstream 53652 17677928 ~ 17678442 (+) True G64595
TU87161 lncRNA upstream 57933 17622861 ~ 17674161 (+) True G64586
TU87358 lncRNA downstream 23474 17769247 ~ 17815728 (+) True G64710
TU87352 lncRNA downstream 34909 17780682 ~ 17812684 (+) True G64709
TU87357 lncRNA downstream 34909 17780682 ~ 17815649 (+) False G64709
TU87355 lncRNA downstream 35747 17781520 ~ 17812684 (+) False G64709
TU87407 lncRNA downstream 211840 17957613 ~ 18008671 (+) True G64753
XM_022671453.1 mRNA upstream 12236 17707970 ~ 17719858 (+) True LOC111192980
XM_022671443.1 mRNA upstream 29179 17690206 ~ 17702915 (+) True LOC111192975
XM_022671178.1 mRNA upstream 149966 17568799 ~ 17582128 (+) True LOC111192910
XM_022671177.1 mRNA upstream 175541 17309065 ~ 17556553 (+) True LOC111192909
XM_022671409.1 mRNA upstream 849155 16833290 ~ 16882939 (+) False LOC103030423
XM_022671434.1 mRNA downstream 2855 17748628 ~ 17764121 (+) True LOC111192970
XM_022671427.1 mRNA downstream 23155 17768928 ~ 17780592 (+) True LOC111192968
XM_007242882.2 mRNA downstream 58511 17804284 ~ 17805826 (+) True amn
XM_022671418.1 mRNA downstream 114444 17860217 ~ 17879272 (+) True otop2
XM_022671451.1 mRNA downstream 178573 17924346 ~ 17929849 (+) True LOC111192979
TU87328 other upstream 12666 17690209 ~ 17719428 (+) False G64698
TU86972 other upstream 843899 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other upstream 856153 16873087 ~ 16875941 (+) True G64449
TU86961 other upstream 867640 16833296 ~ 16864454 (+) False LOC103030423
TU86945 other upstream 978534 16753043 ~ 16753560 (+) True G64431
TU87714 other downstream 874087 18619860 ~ 18623499 (+) True G64990
TU87957 other downstream 1531029 19276802 ~ 19278815 (+) False LOC103044219
TU87956 other downstream 1534527 19280300 ~ 19340879 (+) True alyref
XR_002650196.1 other downstream 2034890 19780663 ~ 19794279 (+) False LOC103037311
TU88511 other downstream 3211362 20957135 ~ 20957635 (+) True G65565

Expression Profile