RNA id: XM_022671432.1


Basic Information

Item Value
RNA id XM_022671432.1
length 2717
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC103035713
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18687257 ~ 18706546 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTGCTGCAGGAGTTAGCGGGGCTCTGTGAGAGGGTCAGCCGGGGGAGGAGCGCTTCACGGCGGTTGTTTGGCAACAAACTCCTCGGCGTCTAACGCTAAAGTCtgcgggagtgtgtgtgtgtgagtgttagctaactatgctaagctaaactatgctaagctaagctgagctgaggtaaatgttagTCAGTAAGATAACCaagcttagctaagctaacggcaGCAGCTGCTGCTTTCTCCGTTTTACcacagttagctaactagcttagcgATTGTTTTAATGACATTTCTCCACATTTGGAGGTTCGCCACCCATTTTTTATCGGTAGTTAACGTTATTATTTAATACTtaattagctagatagctagcttcACCTGCTAAACTTGAAGAATGAACGTCCCGAAAAGCGGCTACCGGGTTTTCTCCGCCAACTCTACCCCTGCCTGCACCGAACTTGCCAAGAAAATCACAGAgcGCCTTGGAGTGGAGCTGGGAAAATCTGTGGTCTACCAGGAGGCTAACACAGAAACCAGAGTCGATGTCAAAGAGTCCGTCAGAGGCCAATCCATCTTCATCATCCAAACAATTCCCAGAGATGTGAACACAGCTATCATGGAGATGCTGGTCATGGCGTATGCACTTAAAACCTCCTGTGCCAAAAACATTATCGGAGTTATCCCATACTTCCCTTACAGTAAACAGTGCAAGATGAGGAAGAGAGGATCCATCGTGTGTAAACTTCTGGCGTCCATGCTGGCCAAAGCAGGTTTGTCTCACATCATCACCATGGACCTCCATCAGAAGGAGATCCAGGGGTTCTTCAGCTTCCCCGTGGATAATCTGCGCGCCTCCCCGTTCCTCCTACAGTACATCCAAGAAGAGATCCCCGACTACAGAAATGCCATTATTGTTGCCAAGTCCCCTTCTGCTGCAAAGagGGCTCAGTCGTACGCTGAGCGGTTGCGTTTGGGTCTGGCTGTAATTCACGGGGAGGCGCAGTGCTCTGAATCCGACATGGCCGACGGACGCCACTCCCCTCCCTGCGTCCGCAACACCAGCGGCCACCCCGGACTGGAGCTGCCATTAATGATGGCCAAGGAGAAACCGCCCATCACCGTGGTGGGAGACGTGGGAGGACGCATCGCCATCATTATCGATGACATCATTGATGACGTGGAGGATTttgtagcagcagcagagatCCTGAAGGAGAGAGGAGCGTATAAGATCTATATCATGGCGACTCACGGCCTGCTGTCTGCTGACGCCCCGCGCCTCATCGAGGAGTCCGCCATCGACGAAGTGGTAGTGACCAACACCGTTCCTCACGAGGTGCAGAAGCTGCAGTGCCCGAAGATCAAGACCGTGGACGTCAGCATGATCCTGGCCGAAGCGATACGCCGCATCCACAACGGCGAGTCCATGGCCTACCTGTTCCGCAACATCACTGTAGATGATTAGAGGACAGGTGGAGGTGAGGCTCCTCCCACTGTGAACCTTCTAACAGTGccaagtgtttctaataacaCACCTTAAACCAGTTCAACAGTACAACAGTAAAAGTAGAAAAGCTTCAGGCCTAAAGCAATTTTACCCCATTTACTCTTCTGCAGTCCCCAGTTTATCTGCACTGCTTCCAATGAGTGAGTTTACCTGCACTTCATAATCAGATTATATTATCTGAttataatcagattactgcTGTTATCTCATTATTCAAGttcatttaaacatgttaaTACTTAAAACTCAGATTttctaaaaatctgattaatatCTGACTTTCAATGTAAACTGTGACTGTTCCGATTATCTGATTACCCAAGTTCATGGAAATGCATTAACCGTATTACTGTCTCAGATGTTATGtagtaatcagattataaaaTGTTGCCAAATATCGGTAGAATACAGACACAACACCAGTGTTCCACAGTAATCTGATTATGAAAACGTGTTGATCGAATTTCTGACCGTATTAACTTTGGTATTAACTTAAAATCTGATTATCTTCTATTATCTGATTATAGAAGTTCATGGTAATGttgttctgcagtaatcaggttataaaaaaaagcatataaacATGTTAATTGGATTACAGACAGACAATCTGATTACTGCCTGACTCATGTAAACAATGAGTTTTCACGTTATCTGATTACCCATGTTCATGTAAATGTGTTGATTGGATTTTTGCCCATATTAACTTTGACGTTTAACTTAAATCTGATTATCTTCCATTATCTGATTATTGATGTTCATGTAGATGTGTTGACACAGATTGGCACAGATTTGGAATTGTGTGTGAACACCTTGATCAGATTATTAACCGTATTAACTTTAACAGTTTAGAAAATCTTTTGTTctacagtaatcagattataaaaAAGCATGTAAACATGTTGATTGGATTACTGACAAAATTGGATGTTCTGAAAATCTGATTACTGTCCTGACTCATGTTATCTGATTATTGATATCCATGTAAATGTGTTGAACCGATTACTGACGGTATTAACTTCGATAAAATCTGATTATATTGTTGGCTGAGTGCGTTAATCGTATTTCTGACGGACTCTGATGATAAattctgcagtaatcagattttgaAGTGCAGGAAaacgctctgattggctgcagcgGTACCTCCTGTATGTCGTTCGATTGTGTTCGTGTATTTGATTGTAGGCTGCACCGGCTCCTCTGTATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87713 lncRNA upstream 63764 18556128 ~ 18623499 (+) False G64990
TU87703 lncRNA upstream 71105 18536667 ~ 18616158 (+) True G64980
TU87715 lncRNA upstream 117773 18567027 ~ 18569490 (+) True G64991
TU87519 lncRNA upstream 181536 18504951 ~ 18505727 (+) True G64834
TU87505 lncRNA upstream 265076 18418747 ~ 18422187 (+) True G64822
TU87758 lncRNA downstream 5068 18711614 ~ 18759292 (+) True G65019
TU87784 lncRNA downstream 85636 18792182 ~ 18840564 (+) True G65044
TU87794 lncRNA downstream 127413 18833959 ~ 18834854 (+) True G65053
TU87898 lncRNA downstream 194906 18901452 ~ 18908686 (+) True G65116
TU87909 lncRNA downstream 238780 18945326 ~ 19032751 (+) False G65122
XM_022671412.1 mRNA upstream 4147 18669432 ~ 18683116 (+) True LOC107197347
XM_022671439.1 mRNA upstream 17829 18657276 ~ 18669434 (+) True LOC111192972
XM_022671448.1 mRNA upstream 32574 18652128 ~ 18654689 (+) True LOC111192977
XM_022671438.1 mRNA upstream 53020 18631412 ~ 18634243 (+) True LOC103027278
XM_022671441.1 mRNA upstream 435912 18215692 ~ 18251351 (+) True LOC111192973
XM_022671417.1 mRNA downstream 283971 18990517 ~ 19019268 (+) True LOC111192965
XM_022671183.1 mRNA downstream 470456 19177002 ~ 19178587 (+) True LOC111192912
XM_022671184.1 mRNA downstream 516663 19223209 ~ 19249152 (+) True LOC103045528
XM_022671456.1 mRNA downstream 561876 19268422 ~ 19271847 (+) True LOC103043906
XM_022671461.1 mRNA downstream 570458 19277004 ~ 19279517 (+) True LOC103044219
TU87714 other upstream 63764 18619860 ~ 18623499 (+) True G64990
TU87328 other upstream 967835 17690209 ~ 17719428 (+) False G64698
TU86972 other upstream 1799068 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other upstream 1811322 16873087 ~ 16875941 (+) True G64449
TU86961 other upstream 1822809 16833296 ~ 16864454 (+) False LOC103030423
TU87957 other downstream 570256 19276802 ~ 19278815 (+) False LOC103044219
TU87956 other downstream 573754 19280300 ~ 19340879 (+) True alyref
XR_002650196.1 other downstream 1074117 19780663 ~ 19794279 (+) False LOC103037311
TU88511 other downstream 2250589 20957135 ~ 20957635 (+) True G65565
TU88525 other downstream 2317629 21024175 ~ 21024574 (+) True G65575

Expression Profile