RNA id: XM_022671433.1


Basic Information

Item Value
RNA id XM_022671433.1
length 1352
RNA type mRNA
GC content 0.57
exon number 4
gene id tspan10
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18586569 ~ 18590070 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGACTGCTGCCACTGACCGCCCGAGCTGGCACTGACTGTTGGCACTGACTGTTGGCACTGACTGTTGGCACTGACTGTTGGCACTGACCGTTGGCACTGACCGTTGGCGCAGTAAGTCAGGGGCAGCAGTATGAGATGAGCCGCTCTTCGGTTTTGAGGAGGTTCCCCTTTTTCTGGAAACGAGGGAATAATATCCAGGATGAAGAGACCAGACCCCTCGTACCAAAGGAAGACCCTCAGGTGCGTCACCCCTCTTCTGCACCCGGGTCGGGTACGGACGACAGCTCCGAGAGCAAGACGGACTCCAGCTCCTCCAGCCGTGAATACGGAAGCAGCAGCAGGACGTTCCTGAGCCCGCGGAGCAGCAGGACCTCCAGGCTGACGGATTACCTGCTGAAGTACGTCCTGTTCTCCAGTAACCTGCTGTTCACGGCGCTGGGTCTGGCCATGCTGGGGCTCGGGCTCTGGGGGCTCCTCAGTAAGGAGTCCTTCTCCCAGGAGAAGCTGGGGAGTCTGGGTACGGACCCCATGCTGCTGTTCGTGTTCCTGGGTCTGGTTCTGACGCTGCTCTGCGTGACCGGCTGCGTCGGCGCCGTGCGGGAGAACTACTGCCTGCTCCGGATCTTCTCCGTGGTTCTGCTGGCGCTGGTGGCGGCGCAGGTTCTGGCGGCCATCGTGGCGTACGGTCTGCAGGGCCGTATCGCCGACTTCCTGCGTACGGGAATGCTGACCGCCATGGCGCGCTACCAGGACGACCTGGACATGAGGTTCATCACCGACGAGATCCAGACCGGCCTGCAGTGCTGCGGCGCCGAAAACTACCGGGACTGGCAGATCAACAGCTACTTTAACTGCTCGGCTCCGGGAGTGCAGTCCTGCAGTGTTCCTGCGTCCTGCTGTGTGGATCCTCTGGAGAACGGGACGGTGTGGAACTCTCAGTGTGGGTTTGGAGCTCTGCAGCTGGACGAGTTCTCGGCTCAGAGCGTGATATTTCTGGGCGGGTGTCTGGGCAGCATCTCGCGCTGGATCCAGCAGCACTCCGGACTCATCAGCACCGTGGTGGTCGTTCTACTGGGGGTTCAGATCATCACGCTGGTTATAACCACACGCCTGCTGGACAGGATCCAGTGGAACAGAGCTCAAGCTCGTCAAGGACTTGTGAGAACCTGATGATACGTACAGTATCACTGATATAAACACTGCGAGCTGCGAGGAGACCTACCGTATTAATATCTGTACTATACTGTGTGTAGATAGACCTGCCTTCTGGTCTTATGGtgctacataaaataaaaaaattaccgtatttttcgcactataaggagcatttaaaatactttcattttcccaa

Function

GO: NA

KEGG:

id description
K17351 TSPAN10; tetraspanin-10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87830 lncRNA downstream 4553 18581608 ~ 18582016 (-) True G65069
TU87826 lncRNA downstream 26021 18560128 ~ 18560548 (-) True G65067
TU87825 lncRNA downstream 26021 18560203 ~ 18560548 (-) False G65067
TU87675 lncRNA downstream 140802 18444626 ~ 18445767 (-) True G64959
TU87661 lncRNA downstream 258109 18327721 ~ 18328460 (-) True G64948
TU87823 lncRNA upstream 29641 18619711 ~ 18623603 (-) True G65066
TU87810 lncRNA upstream 34805 18624875 ~ 18712520 (-) True LOC111192976
TU87811 lncRNA upstream 115070 18705140 ~ 18709436 (-) False G65064
TU87812 lncRNA upstream 115070 18705140 ~ 18709436 (-) False G65064
TU87815 lncRNA upstream 115070 18705140 ~ 18709436 (-) False G65064
XM_022671419.1 mRNA downstream 11400 18567677 ~ 18575169 (-) False LOC103028209
XM_007241952.3 mRNA downstream 11400 18568250 ~ 18575169 (-) True LOC103028209
XM_022671440.1 mRNA downstream 35596 18538903 ~ 18550973 (-) True LOC103028836
XM_022671182.1 mRNA downstream 49826 18489652 ~ 18536743 (-) True LOC103034879
XM_007243061.3 mRNA downstream 230074 18353333 ~ 18356495 (-) False LOC103047157
XM_022671447.1 mRNA upstream 35005 18625075 ~ 18629969 (-) False LOC111192976
XM_022671445.1 mRNA upstream 35005 18625075 ~ 18629969 (-) False LOC111192976
XM_022671446.1 mRNA upstream 37708 18627778 ~ 18629969 (-) False LOC111192976
XM_022671444.1 mRNA upstream 37708 18627778 ~ 18629969 (-) False LOC111192976
XM_022671437.1 mRNA upstream 48237 18638307 ~ 18650301 (-) False LOC111192971
TU87588 other downstream 655399 17928507 ~ 17931170 (-) True G64886
TU87274 other downstream 989024 17586845 ~ 17597545 (-) False LOC111192911
TU87843 other upstream 53301 18643371 ~ 18650343 (-) False LOC111192971
TU88001 other upstream 308115 18898185 ~ 18919522 (-) False G65184
TU88002 other upstream 308115 18898185 ~ 19023658 (-) True G65184
TU88053 other upstream 690232 19280302 ~ 19284032 (-) True G65231
TU88123 other upstream 1010144 19600214 ~ 19605682 (-) False ndufb2

Expression Profile