RNA id: XM_022671434.1


Basic Information

Item Value
RNA id XM_022671434.1
length 1508
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC111192970
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17748628 ~ 17764121 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCAGTCTGAAACCTGCGCCTTATTAACAGAGACCAGATATTTGTTCTCTGGAAAGGTTAAGAAGAGCAGTCACCGTATCTAAGCCCCCGTTTTCCTGCCAATCTGAAGAGAAGGACAACATGGTGCTTGCACAGAGAATTCTGAATGTTTTATGCATCATGTCATATTTAATTGCATGTTCCGATGTTGTTGCGGAAAATACAACATGCTTTTCACGCCGATGTCTGGCTAATGAAATGATCGCTAAAGAGCTGTTCAGTCCTCCTCAGCCACCATCCTGCGCTGTTAAAGTGAACCTCACCTCCATCCAGTATGAAACCCTGTCTGTGgataCAAAAACCCTGCGTTTCACAAGCCGCATCAAAATTGAAATGGAATGGAAGGATCCAGACCTGGCATGGACCGACTCGCAGTACGAATTTACAGAACTGATGCTACCGGTCGACAAAATCTGGACACCAGACATGACAGTGGACAATGCAGTGGAAACAGAGGTCAAACCAGTAAATACTGATATACTGGTGAGAAAGGATGGCACTGTGGAGCACTCCATCCAGATGTACACAACCGTCGTGTGTGGAATCAACCTCTTTAACTACCCCTTTGTGAAGGACTCTTGCCCTGTGGCTCTTAACGGATGGAGTCAAAACAATTGTGGCCTGCGTTTCGAGTACGGGTCAGTAACTGCAGTGGGACAAAGTCGAGGAGAATGGCAGACGGTATCAGTGGTGCTCACCAGTGACCAAGGAAAGTTGGATCGGAACTATATCTTAGTCACAATGTCCATTAACCCCTTTAACACCATCGTGACGCTAATCCTGCCCACTGTGCTGATCATGCTGGCTGATCTGGTGAGTTTCGCTCTGCCGCTGGAAGGAGGAAAACGCAGTTCCTTTAAAATAACGCTGGTGCTGAGCTTCACCATGTCGCTGCTCATCCTCACCGACCACCTGCCCGATACCGGCCTCTGCAGCCCCCTCATCCGTTATCATTTCTGTATCTGCTTGGTTTTTCTGGTGCTGAGCTTGCTGGCGTCTATGATCTTCACACGGATGGCTTCAGACGGCAGCATCTTCTCCTGCACGTTACCGAAATGTGGATTAAAAAAAACGATATCAGCAAACATGATAAACTGCAAGATTTAAGTCTGAGTGGTATCTCCACGGTTTCGGGTGAGTTCACGGAGAAGGCCTCGATCCAGAATGTGGTGACGTTCTTGGAGAACATGGAGAAAGCCAACGAGGAGGCAAAGAAGAAGCAGAACCTCGCCAATCGCTTCGACAGAATCTGCTTCTGGATCTATTTCTGCACTGATGTCGTTTACGTCATATGTTTAATCGCCATCACCAGGACAGAGTTTTGCAAAATTAATAATCTGGATTTCTGGTAGGAGGTGTAACAGAGTACGGGTTACAACTTATTTTATCAATAACTATATTCTGATtcttttctctgctgaaactgagactcagttcttaatcatgttaatctatagcgctaaaggcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87329 lncRNA upstream 28716 17716918 ~ 17719912 (+) True G64698
TU87330 lncRNA upstream 29200 17717468 ~ 17719428 (+) False G64698
TU87324 lncRNA upstream 33453 17690209 ~ 17715175 (+) False G64698
TU87170 lncRNA upstream 70186 17677928 ~ 17678442 (+) True G64595
TU87161 lncRNA upstream 74467 17622861 ~ 17674161 (+) True G64586
TU87358 lncRNA downstream 5126 17769247 ~ 17815728 (+) True G64710
TU87352 lncRNA downstream 16561 17780682 ~ 17812684 (+) True G64709
TU87357 lncRNA downstream 16561 17780682 ~ 17815649 (+) False G64709
TU87355 lncRNA downstream 17399 17781520 ~ 17812684 (+) False G64709
TU87407 lncRNA downstream 193492 17957613 ~ 18008671 (+) True G64753
XM_022671428.1 mRNA upstream 2855 17732094 ~ 17745773 (+) True LOC107197389
XM_022671429.1 mRNA upstream 2855 17732094 ~ 17745773 (+) False LOC107197389
XM_022671453.1 mRNA upstream 28770 17707970 ~ 17719858 (+) True LOC111192980
XM_022671443.1 mRNA upstream 45713 17690206 ~ 17702915 (+) True LOC111192975
XM_022671178.1 mRNA upstream 166500 17568799 ~ 17582128 (+) True LOC111192910
XM_022671427.1 mRNA downstream 4807 17768928 ~ 17780592 (+) True LOC111192968
XM_007242882.2 mRNA downstream 40163 17804284 ~ 17805826 (+) True amn
XM_022671418.1 mRNA downstream 96096 17860217 ~ 17879272 (+) True otop2
XM_022671451.1 mRNA downstream 160225 17924346 ~ 17929849 (+) True LOC111192979
XM_022671181.1 mRNA downstream 220844 17984965 ~ 18132010 (+) True LOC103040205
TU87328 other upstream 29200 17690209 ~ 17719428 (+) False G64698
TU86972 other upstream 860433 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other upstream 872687 16873087 ~ 16875941 (+) True G64449
TU86961 other upstream 884174 16833296 ~ 16864454 (+) False LOC103030423
TU86945 other upstream 995068 16753043 ~ 16753560 (+) True G64431
TU87714 other downstream 855739 18619860 ~ 18623499 (+) True G64990
TU87957 other downstream 1512681 19276802 ~ 19278815 (+) False LOC103044219
TU87956 other downstream 1516179 19280300 ~ 19340879 (+) True alyref
XR_002650196.1 other downstream 2016542 19780663 ~ 19794279 (+) False LOC103037311
TU88511 other downstream 3193014 20957135 ~ 20957635 (+) True G65565

Expression Profile