RNA id: XM_022671440.1


Basic Information

Item Value
RNA id XM_022671440.1
length 1916
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC103028836
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18538903 ~ 18550973 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTCGGGGAGCGGAGAGTcagattcactgattcactgattcgaGGAATCGGCTCGTTTTCAGTGCGTTGTGCTGATCTCAGGACTGGGGGAAGTTTGTTTTGGGTCGATTAGACTCCGTAGACGAGCTTTTAGCCAGATAATTACCGTCTTAATCGGGCTGTAGTGTGTTTTAACTCTtgtcttaatttatttgagttgatTTGCTGCAGTTGTTTAGAGTTTATAGCGTTTTAAAGCAGATAAAATGCTCAGTAAATGTGTTTTCTCGGCCCCGCTGCTTCTGGCGCTTATGGTCTGGAGGCTGGGTGAAGTCGCTGAAGCCTGCAGCTGCTCTCCAACACATCCCCAGCAGGCTTACTGCACCACGGATATCGCTATCAGAGCTAAAGTGATTGGACAGAAAGAAGTTGTCGCTGGAAATGACAACTATGGCAACCCAATCAGGAAGATCCAGTATGACATTAAACAGATGAAGATGTTTAAAGGTCCTCAGCAGGAGATTAAAGCCATCTTCACTGCTCCCATCTCTCCTGTGTGTGGGGTGAGCCTGGAGCGCGAGAAGGAATACCTGATCACAGGTAAGCTGGAGTCTGATGGCTCGGTGCACATAACTCTGTGTGATTTCATCGAGCCGTGGGTGTCCCTGACCGTCGCTCAGAAAAGAGGCTTCGAGACTCGCTACGAGACGGGCTGCGACTGCAGGATCGTTCGCTGTGCCTCTGTTCCCTGTGCGGTTAATGATCCAGTAGAGTGTCTATGGACGGACTGGATCACGGAGAGCACTGTGGCGGGTCCCCAGACTCAGCACTACACCTGCATAAAGAGGAACGATAACTCCTGCGCCTGGTACCGCGGCGCCGCCCCGCCCAAGACCGATTTCATGGACATCGAGGATCCGTAAACCTGCAGACAGCAGCACACTCCAGAGCTCGCTTTAGAAAGGCCTCTAAACACTGCTACGGACCCTTTAACATAATCCCGCCCTTCTTCACCTGTATTTAGTACTTTTACACCACAGTTCCTGTTACATAACACGAGATGAAAGGATATGGCAGAGGTGAAGTTCTCTGACTTTCTTAAGCACTTTGAGTCCCCAGTAGCACCTGGCTGTGACCTTACGCTGtagagaaaatacatttttaaaaaaagctagTACCACTTTTagcgtttttctattttttatatttgggaGGTAATTAAATCACAGCAAGCATGAAAAATTGCTAATAGTTATTTTATCTAATCCATGCTAAATGCTTTTAAGATGATGATTAGATAAATGCTCTATTCGGGAGGTGGagttatgtaatgtaaagtaatgttaCTATAGGACGCCTTTAAAATTTATGACAATGCAATCTGGTGATATGCTAGTTTATGTatgttgtaatatatatatatatacaaacatttCTAATTTATATCTAAACATTCCATTATCTTGTTTTTtcacacaataaaaatagaataccCTTTTTCCCCATtcctatttttacatttttctataattttgtgtttttattgttaagaGTTAAACCAGAGTTGAGGCgattaatgtttataatttccAGTATTCCTCCAGTCTTTCAGTCCGATAATCTTCAACATTCAACATTCAAACGTCAATTGTGTGGAAAAGGTTGTGAAGCCTATGTTTAATGTAGTCATTTTGTATATCATggtattgtttttttagtattttttatttctatgctcctgtactgtgtttgtttttcaaatgtttgaatgtttttttttgtttttctttttttagtatcacaaaaataaataagtgtgaGATTTCCGGTGCTGGAACCACTTGGGAAGACTTTGAGAGCTAACCTGTGCATGCCTTTCATAATTCTGTATTATTCATGTtggtttaacagttttaaataaaggaaaagaaaagca

Function

GO:

id name namespace
GO:0010466 negative regulation of peptidase activity biological_process
GO:0052548 regulation of endopeptidase activity biological_process

KEGG:

id description
K16866 TIMP3; metalloproteinase inhibitor 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87675 lncRNA downstream 93136 18444626 ~ 18445767 (-) True G64959
TU87661 lncRNA downstream 210443 18327721 ~ 18328460 (-) True G64948
TU87646 lncRNA downstream 308420 18199063 ~ 18230483 (-) True G64936
TU87649 lncRNA downstream 316711 18203144 ~ 18222192 (-) True G64938
TU87632 lncRNA downstream 364913 18172532 ~ 18173990 (-) True G64926
TU87826 lncRNA upstream 9155 18560128 ~ 18560548 (-) True G65067
TU87825 lncRNA upstream 9230 18560203 ~ 18560548 (-) False G65067
TU87830 lncRNA upstream 30635 18581608 ~ 18582016 (-) True G65069
TU87823 lncRNA upstream 68738 18619711 ~ 18623603 (-) True G65066
TU87810 lncRNA upstream 73902 18624875 ~ 18712520 (-) True LOC111192976
XM_022671182.1 mRNA downstream 2160 18489652 ~ 18536743 (-) True LOC103034879
XM_007243061.3 mRNA downstream 182408 18353333 ~ 18356495 (-) False LOC103047157
XM_007243060.3 mRNA downstream 182408 18353333 ~ 18356495 (-) True LOC103047157
XM_022671454.1 mRNA downstream 618092 17884620 ~ 17920811 (-) True hid1
XM_022671424.1 mRNA downstream 683741 17840179 ~ 17855162 (-) True ush1g
XM_022671419.1 mRNA upstream 16704 18567677 ~ 18575169 (-) False LOC103028209
XM_007241952.3 mRNA upstream 17277 18568250 ~ 18575169 (-) True LOC103028209
XM_022671433.1 mRNA upstream 35596 18586569 ~ 18590070 (-) True tspan10
XM_022671447.1 mRNA upstream 74102 18625075 ~ 18629969 (-) False LOC111192976
XM_022671445.1 mRNA upstream 74102 18625075 ~ 18629969 (-) False LOC111192976
TU87588 other downstream 607733 17928507 ~ 17931170 (-) True G64886
TU87274 other downstream 941358 17586845 ~ 17597545 (-) False LOC111192911
TU87843 other upstream 92398 18643371 ~ 18650343 (-) False LOC111192971
TU88001 other upstream 347212 18898185 ~ 18919522 (-) False G65184
TU88002 other upstream 347212 18898185 ~ 19023658 (-) True G65184
TU88053 other upstream 729329 19280302 ~ 19284032 (-) True G65231
TU88123 other upstream 1049241 19600214 ~ 19605682 (-) False ndufb2

Expression Profile