RNA id: XM_022671451.1


Basic Information

Item Value
RNA id XM_022671451.1
length 2264
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC111192979
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17924346 ~ 17929849 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGCATTGTGATGTaaatagtagcagtagcaggTAGCTAGCTGAGCTTAGCTTGTGGATCTCTGCGGTGTAGATAAGGAATTCTCACCGCGTTTAAACTGAGAGAAGCTGCGGGAGGAGTTACATTAACCCGAGTCTTTAGCGGGGAGAGAATATTCTGGGgggtttagtttatttaattagctttattttattagCGTACGTAAAGAACTAGGGCTAGCTAGGGAGCGAGCAGGCTAGCTAGGCTACCTATTTAGGCAGCTAGCCGGGCAGTGAACAGCTgaccgttagcttagcatagcttagcttaTATAGAGGAGCTGACTGGCTGGAGAGCTTTCTATTCGgatagctagctggctaacaacATTATCAGGCTTTATCTGTGTTAAATAGTTAGCTATCTTAGCTAACctatattttctgtaattaattatttagctATAGAAGCATTAAGTATTATAATAAGTTTAGAAGGAGTAGAGTCTTCAGTTCTCGTTTGGATGACTTGTAGTTAGTTAGTTCGCTTAGCTAGCTACTAGCTTTAGCTTACTGTTAGTCTGTTAGCTGTGGTTTGGGGTGTTTTTAAGTCTTTCTATTCGTATTAAACCCGTTTTATAGCTATAATTAAGCCTCCAGCGATGTTTTAAAACgttaaaaacgttttaaaagATAACAAACTCCTGTAATTAATTGAATTAACTTTCTGGACAGACCAAAGGACGTCGTTGTtggagagctagctagctaagctagttaaccTAACTACTTTACCTACAGTGCAGCTATGCTGACTGAAAGCAGGAAACGTCAGCGTACTCAAGGCGATGATGAAGATGCACATCTAATGCCTCAGTCCAAAAGATCCAGCGCAACACACAAGTCCTCTGAGCCCAGCGTAGAGGTGTGGGAGTCTGAGtccTCCAGCTGTGACAGCAGTGGGGTCAGTAGTCCGGAGCATGCagctgggagcagcagcagcaccagcagccaGTATGGAGCtgacaatctggcaaccctcgCCACCCTCGGGCCCTGCAGTCCCCTCAGCTCCTCGGACCAGACCGGCCCCAGCGGCCTGGGCTCGTACCAACATATCAACCAGGTCCTGAGAGAGGCGCACTTCCAGAGCCTGCAGAAAAGAGGACAGTCCCGGGACAGGTGATCTGCTGGCTTTCTGGGACGTTCAGGGACATTTCTTCTCATCTGTGGTGCATGAAAACGACGACGCCTTCGCTCTGCCGGAAGCCCGACCACGTTCCCCAGACGACAGGGTAAAGGTTAAAGGTCGAAGCTTAAATCGGCTCCATCGCCATCTAAAGTCTGCGAGTCTGCTCTTactaagattattattattattattattattattattaataataattattattttctaggtcttcttcttctttattttccaCACGCTAGAGCTCTCATTTGTGTTGGTGTGCTTTCGAATAGTAAGTGTGACCTGGAACTGTAAACCCGTCGACTAATTAGAGCACAAAAGTGTTCATATTGTAAGCAATAATAGCTTGTCTACGATGCAACCTTTTGTGACATTCACACTGtgtacttttctcctgaacagacCGGTTTACAGATGAGAAGTGAGAGCTTTGCTGTGTGAGCGACttttacttttcattttcattttgtttttgatttagAGTGGAACTGCAACttgaaacttaatttttttttccatttctttttattttaatattggtaatattattatttttattattttctgtcttGGGATTGGGCGTGAAGTAGCAGGTTACCTGTGCACTTGTGGCTTTATGGTAGAGGGGTGATAATGAGGGTCCAAGCGAATCATATAAAATCGtataaaatcatattaaataaaaaaaaaacaaatcatattaATCACAGCAACAAGGGAGTAATCCaggtatttgttttttatttttattattattttttgatcCCCTTTGTTTTATTGGCACTTGATGTACATTGATATACATGGTGTAAcctatagataaatataaatatatatgattaaaGGCAAGGTGCTTAATTCTGTGCGATGAAACAGCCGACCCTctacatcatcattattattattattattattattattattatttattttttttagtttgtttttttagttttagtccaggttcacactacgtgattttatttttattattattttttttttttaagatcagATTTTCTAGTAGCAACTCTTTTTGAAGATTTCTGACCAAATCGTTgtcaaaaaagaagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87358 lncRNA upstream 108618 17769247 ~ 17815728 (+) True G64710
TU87357 lncRNA upstream 108697 17780682 ~ 17815649 (+) False G64709
TU87352 lncRNA upstream 111662 17780682 ~ 17812684 (+) True G64709
TU87355 lncRNA upstream 111662 17781520 ~ 17812684 (+) False G64709
TU87329 lncRNA upstream 204434 17716918 ~ 17719912 (+) True G64698
TU87407 lncRNA downstream 27764 17957613 ~ 18008671 (+) True G64753
TU87408 lncRNA downstream 42730 17972579 ~ 18061330 (+) True G64754
TU87425 lncRNA downstream 69526 17999375 ~ 18000064 (+) True G64760
TU87429 lncRNA downstream 77305 18007154 ~ 18008138 (+) True G64763
TU87430 lncRNA downstream 82632 18012481 ~ 18348193 (+) True G64764
XM_022671418.1 mRNA upstream 45074 17860217 ~ 17879272 (+) True otop2
XM_007242882.2 mRNA upstream 118520 17804284 ~ 17805826 (+) True amn
XM_022671427.1 mRNA upstream 143754 17768928 ~ 17780592 (+) True LOC111192968
XM_022671434.1 mRNA upstream 160225 17748628 ~ 17764121 (+) True LOC111192970
XM_022671428.1 mRNA upstream 178573 17732094 ~ 17745773 (+) True LOC107197389
XM_022671181.1 mRNA downstream 55116 17984965 ~ 18132010 (+) True LOC103040205
XM_022671423.1 mRNA downstream 231223 18161072 ~ 18172237 (+) True LOC103030006
XM_022671422.1 mRNA downstream 246378 18176227 ~ 18193170 (+) True LOC107197388
XM_022671449.1 mRNA downstream 266906 18196755 ~ 18213076 (+) True LOC111192978
XM_022671441.1 mRNA downstream 285843 18215692 ~ 18251351 (+) True LOC111192973
TU87328 other upstream 204918 17690209 ~ 17719428 (+) False G64698
TU86972 other upstream 1036151 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other upstream 1048405 16873087 ~ 16875941 (+) True G64449
TU86961 other upstream 1059892 16833296 ~ 16864454 (+) False LOC103030423
TU86945 other upstream 1170786 16753043 ~ 16753560 (+) True G64431
TU87714 other downstream 690011 18619860 ~ 18623499 (+) True G64990
TU87957 other downstream 1346953 19276802 ~ 19278815 (+) False LOC103044219
TU87956 other downstream 1350451 19280300 ~ 19340879 (+) True alyref
XR_002650196.1 other downstream 1850814 19780663 ~ 19794279 (+) False LOC103037311
TU88511 other downstream 3027286 20957135 ~ 20957635 (+) True G65565

Expression Profile