RNA id: XM_022671453.1



Basic Information


Item Value
RNA id XM_022671453.1
length 1020
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC111192980
representative True

Chromosome Information


Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17707970 ~ 17719858 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


cagagtgcagtaatgcaggctataaagtgtgtggtggtgggagACGGGGCTGTAGGTAAAACATGTCTGCTGATCAGCTACACCACCAACGCTTTCCCAGGAGAGGACATCCCCACAGTATTTGATAACTACTCTGCGAATGTGATGGTGGATGGAAAACCAGTTAACCTGGGTCTGTGGGATACAGCAGGACAGGAAGGCTACGACAGGATCCGCCCCCTCTCCTACCCTCAGACAgatgtgtttttgatctgtttctctcttgtAACTCTGGCCTCTTTAGAAAACATTCGCACAAAGTGGTACCCAGAAGTAAGACACCACTGTCCAAACACTCCCATCATCCTGGTAGGAACTAAACTCGATCTGAGGGACGATCAGGACACCATCGAGAAGCTGAAGGAGAGGAAGCTCACCCCCATCACCTACCCTCAGGGCCTGGCCATGGCTAAAGAGATCGGAGCCGTAAAGTACCTGGAGTGCTCAGCCCTGACTCAGCGCGACcttaaaacagtgtttgatGAAGCCATCAGAGCCGTCCTCTGCCCTCCGCCGGTGAAGAGCAGGAAGAGGAAGTGCACCCTGCTGTAGAAGTGGAcctatgaatatatatatatatttatatatatgtatatgaatatgaatattttggGCCTGAACAGCTTCAGTGTTGTTTACCTGCTTCAACAGAAGCACAGATATACCTCTTAACTACGCTACAGCAAGATTGTAACTCGCTAtcgttaagctaagctaagctaatccTCTTCAATACTACAGCCCAGTCTATGTAAAACAATTAATGAGATTAACGAGAtggaaacaaacaaactgaggtctgaaagtgtggaaagtgtgtgtatgtgtgtactgaAGTGtatgtgaaaatgtgtgtgtgggaatcGATGCATCGATCATATAAAAGAACACTATATATATTAGGGCTATCTGTATTCTTGATCCTTTAATGGTTTCGATGCATTTATAATAAACcttataataaatacagcagtAAATATT

Function


GO:

id name namespace
GO:0060071 Wnt signaling pathway, planar cell polarity pathway biological_process
GO:0072659 protein localization to plasma membrane biological_process
GO:0043552 positive regulation of phosphatidylinositol 3-kinase activity biological_process
GO:0045087 innate immune response biological_process
GO:0071542 dopaminergic neuron differentiation biological_process
GO:0021799 cerebral cortex radially oriented cell migration biological_process
GO:0045453 bone resorption biological_process
GO:0045740 positive regulation of DNA replication biological_process
GO:0034446 substrate adhesion-dependent cell spreading biological_process
GO:0003382 epithelial cell morphogenesis biological_process
GO:0002551 mast cell chemotaxis biological_process
GO:0021831 embryonic olfactory bulb interneuron precursor migration biological_process
GO:0006954 inflammatory response biological_process
GO:0030168 platelet activation biological_process
GO:0031295 T cell costimulation biological_process
GO:0038095 Fc-epsilon receptor signaling pathway biological_process
GO:0038096 Fc-gamma receptor signaling pathway involved in phagocytosis biological_process
GO:0035025 positive regulation of Rho protein signal transduction biological_process
GO:0048532 anatomical structure arrangement biological_process
GO:0006972 hyperosmotic response biological_process
GO:0048813 dendrite morphogenesis biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0048261 negative regulation of receptor-mediated endocytosis biological_process
GO:0043652 engulfment of apoptotic cell biological_process
GO:0002093 auditory receptor cell morphogenesis biological_process
GO:0050690 regulation of defense response to virus by virus biological_process
GO:0090103 cochlea morphogenesis biological_process
GO:0045216 cell-cell junction organization biological_process
GO:0032707 negative regulation of interleukin-23 production biological_process
GO:0097178 ruffle assembly biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0097190 apoptotic signaling pathway biological_process
GO:0008283 cell population proliferation biological_process
GO:0048011 neurotrophin TRK receptor signaling pathway biological_process
GO:0030838 positive regulation of actin filament polymerization biological_process
GO:0016601 Rac protein signal transduction biological_process
GO:0060263 regulation of respiratory burst biological_process
GO:0007411 axon guidance biological_process
GO:0001934 positive regulation of protein phosphorylation biological_process
GO:0030334 regulation of cell migration biological_process
GO:0016032 viral process biological_process
GO:0010310 regulation of hydrogen peroxide metabolic process biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0010592 positive regulation of lamellipodium assembly biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0051668 localization within membrane biological_process
GO:0032587 ruffle membrane cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0005829 cytosol cellular_component
GO:0042470 melanosome cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0019897 extrinsic component of plasma membrane cellular_component
GO:0001891 phagocytic cup cellular_component
GO:0030027 lamellipodium cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0030742 GTP-dependent protein binding molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0051022 Rho GDP-dissociation inhibitor binding molecular_function
GO:0031996 thioesterase binding molecular_function

KEGG:

id description
K04392 RAC1; Ras-related C3 botulinum toxin substrate 1

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU87170 lncRNA upstream 29528 17677928 ~ 17678442 (+) True G64595
TU87161 lncRNA upstream 33809 17622861 ~ 17674161 (+) True G64586
TU87142 lncRNA upstream 85298 17565712 ~ 17622672 (+) True G64579
TU87156 lncRNA upstream 111841 17588922 ~ 17596129 (+) True G64583
TU87147 lncRNA upstream 142513 17562563 ~ 17565457 (+) True G64580
TU87358 lncRNA downstream 49389 17769247 ~ 17815728 (+) True G64710
TU87352 lncRNA downstream 60824 17780682 ~ 17812684 (+) True G64709
TU87357 lncRNA downstream 60824 17780682 ~ 17815649 (+) False G64709
TU87355 lncRNA downstream 61662 17781520 ~ 17812684 (+) False G64709
TU87407 lncRNA downstream 237755 17957613 ~ 18008671 (+) True G64753
XM_022671443.1 mRNA upstream 5055 17690206 ~ 17702915 (+) True LOC111192975
XM_022671178.1 mRNA upstream 125842 17568799 ~ 17582128 (+) True LOC111192910
XM_022671177.1 mRNA upstream 151417 17309065 ~ 17556553 (+) True LOC111192909
XM_022671409.1 mRNA upstream 825031 16833290 ~ 16882939 (+) False LOC103030423
XM_022671408.1 mRNA upstream 896740 16783913 ~ 16811230 (+) True LOC103035087
XM_022671428.1 mRNA downstream 12236 17732094 ~ 17745773 (+) True LOC107197389
XM_022671429.1 mRNA downstream 12236 17732094 ~ 17745773 (+) False LOC107197389
XM_022671434.1 mRNA downstream 28770 17748628 ~ 17764121 (+) True LOC111192970
XM_022671427.1 mRNA downstream 49070 17768928 ~ 17780592 (+) True LOC111192968
XM_007242882.2 mRNA downstream 84426 17804284 ~ 17805826 (+) True amn
TU86972 other upstream 819775 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other upstream 832029 16873087 ~ 16875941 (+) True G64449
TU86961 other upstream 843516 16833296 ~ 16864454 (+) False LOC103030423
TU86945 other upstream 954410 16753043 ~ 16753560 (+) True G64431
TU86763 other upstream 1265521 16439220 ~ 16442449 (+) True G64289
TU87714 other downstream 900002 18619860 ~ 18623499 (+) True G64990
TU87957 other downstream 1556944 19276802 ~ 19278815 (+) False LOC103044219
TU87956 other downstream 1560442 19280300 ~ 19340879 (+) True alyref
XR_002650196.1 other downstream 2060805 19780663 ~ 19794279 (+) False LOC103037311
TU88511 other downstream 3237277 20957135 ~ 20957635 (+) True G65565

Expression Profile