RNA id: XM_022671454.1


Basic Information

Item Value
RNA id XM_022671454.1
length 2863
RNA type mRNA
GC content 0.53
exon number 19
gene id hid1
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17884620 ~ 17920811 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggcggcagtaacagtaacagcgcggggaggaggaggaggattagTGAAGGATCTCCTCATAATAAAACACACGGGCTGAAAACATGGGAAACACCGACTCCAAACTCAAATTCAGGAAAGCGGTCATTCAGCTCACCACTAAAACCCAGCCTGTTGAAGCTACAGACGATGCGTTCTGGGATCAGTTCTGGGCCGACACCGCCACCACCGTACAGGACACCTTCGCTCTGGTTCCGGCTGCTGAGATCCGGGCTGTGAGGGAGGAATCCCCctccaatctggcaaccctgtgcTATAAgGCGGTGGAGAAGTTGGTGCAGGCGGCGGAGTCGGGATGCCCcagtgaaagagaaaaacaggtggTTCTGAACTGCACCCGCATCCTCACCCGCATCCTGCCCTACATCTTCGAGGACCAGGACTGGAGGGGCTTCTTCTGGTCCACCGTGCCCGGCGCCGGCCGAGCCGGGATGGATgagatggatgatgatgatgaaggagCTCGGCCGCTGGCGGAGTCACTACTGCTGGCCATTGCTGACCTGCTGTTCTGCCCGGATTTCACCGTTCAGAGCCACCGGAGGGGCGGCCCGGAGTCGGTGGAGGACATGCAGTCTCTGGACAGCTGTGAATACATCTGGGAGGCGGGGGTGGGTTTCGCTCAGTCCCCCCCACTCAACTACATTCACGACCTGAACAGGACGGAGTTGCTGAGGCTGCTGTTGACCTGTTTCTCAGAGGCCATGTACCTGCCTCCATCACCTGATGGAAACATCCTCAACCCCTGGGTCACCTTCTTCTGCTCTACAGAGAAcagGCATGCCCTACCTTTGTTTACCTCTCTGATTAACGTGGTGTGTGCGTATGACCCGGTGGGTTACGGCATTCCTTACAACCACCTGCTGTTCTCCGACTAccgcgagcagctggtggagcaggCGGTGCAGATCCTCATCGTCACCCTGGAGCACGAGGGCAACCAGCCCCACCGCGCTCCCTCCCCCTCCAGCATGGACGAGCAGGATTCTGCTGGTCCGGATAACCTGTTTGTGAACTACCTGTCGAGAATTCACAGGGAGGAGGATTATGACTTTGTGCTGAAAGGTCTGGCCCGCCTGCTGACCAATCCGCTCACTCAGACCTACCTGCCCAACTCCACCAAAAAGATCCAGTTCCAccaggagctgctggtgctcttCTGGAAGCTCTGTGACTTTAACAAAAAATTCCTTTTCTTCGTGTTGAAGAGCAGTGATGTGCTGGATGTACTGGTGCCCATTCTCTACTACCTGAATGATGCCAGGGCTGACCAGTCTCGTGTTGGTCTGATGCACATCGGTGTGTttattctgctgctgctgagcgGAGAGAGGAACTTCGGGGTGCGTCTGAATAAACCCTTCTCTCTACACGTCCCTATGGACATCCCAGTGTTCACCGGCACGCATGCCGACCTCCTGATTGTGGTCTTCCACAAGATCATCACGAGTGGCCACCAGCGTCTGCAGCCGCTCTACGACTGCCTGCTCACCATCGTAGTGAATGTGTCCCCCTACCTGAAGAGTCTGTCCATGGTGGCGGCTAATAAACTCTTGCACCTTCTGGAAGCTTTTTCTACCAACTGGTTCCTGTTCTCCGCTGCTCAGAACCACCATCTGGTCTTCTTCCTGCTGGAGGCCTTTAATAACATTATCCAGTACCAGTTTGATGGTAACTGTAACCTGGTGTACGCCATCATCCGGAAGCGCAGCGTCTTCCATCAGCTGGCGAACCTGCCCACCGACCCAGCGTCCATCcagaaagctctgcagaggAAGAAGAAATCTCCAGACGCCATCTCTCGCACCAACTCCCTGGAGACCGTCTCCATGGAGGGATCTCGACCCGCTGTACCTGCAGAGCCCGGCACCTTGAAGGCCAGCCTTGTTGCTATACCAGGTATTGATAAGTTAACGGAGAAGTCTCAGGTGTCAGAAGATGGTACCATGGTCGCCGTGGCGCAGACAGAGACGCAGCGCTCACCAGAACACAGCGGGCTGGCCGGGGCCAGCGACACCGAGTCCAACTCAGGAAGAGACACTGAGGTGAGAGGAGTGATCTGAGACTGCATTTatacagataaacatgaacaggaagcagttgtttttttattcaggttttttttaCCTACAATATGCTTAGAATCAgttctgtcCTGGAAGAGCAAGCTCCCTCTCCAGACCATCATGAGGCTTCTGCAGGTTCTGGTGCCCCAAGTGGAGAAGATCTGCATTgacaaGGGATTAACGGACGAGTCTGAGATCCTGAAGTTCCTGCAGCACGGAACGCTGGTGGGGCTGCTTCCTGTTCCGCATCCCATCCTAATCCGGAAGTACCAGGCCAACGCCGGCACCGCCATGTGGTTCCGCACCTACATGTGGGGCGTGGTGTACCTGCGTAACGTGGATCCGCCGATCTGGTACGACACAGACGTCCGTCTCTTCGAGATCCAGAGGATgtgaagtgggcggggcttcagCTGCCTGTCGCCGACTAAAGGAGGGGCTAATCTATGATGTCAGTTCAGCATTTTTGGCCCCTCCCACTTTGGCTCCCATTTAAAGCTTACAGTCTTCAACCTGCCAATCACAGTGCTGTAATCCATCCTGCCCCTCCCCCGTCTCACTGGAACCCTGGGTAAAGgatggttaatttttttttttttagtttttatttgttttttgtttttgtggaaAGGATTTATTGACTtggatatatatgtatatattaaaatataaatatatatatatatctatatcagTGGGCGTGGCTCACTGTGTTGTTGTGAAGGTTGTTGTAGAAAATGATGaatgacatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87582 lncRNA downstream 2200 17880450 ~ 17882420 (-) True G64882
TU87545 lncRNA downstream 68892 17769247 ~ 17815728 (-) True G64857
TU87520 lncRNA downstream 164709 17690229 ~ 17719911 (-) True G64835
TU87521 lncRNA downstream 164709 17699106 ~ 17719911 (-) False G64835
TU87528 lncRNA downstream 169178 17707996 ~ 17715442 (-) True G64841
TU87601 lncRNA upstream 56736 17977547 ~ 17978089 (-) False G64898
TU87602 lncRNA upstream 56944 17977755 ~ 17978089 (-) True G64898
TU87606 lncRNA upstream 78745 17999556 ~ 17999808 (-) True G64902
TU87608 lncRNA upstream 103263 18024074 ~ 18024657 (-) True G64904
TU87632 lncRNA upstream 251721 18172532 ~ 18173990 (-) True G64926
XM_022671424.1 mRNA downstream 29458 17840179 ~ 17855162 (-) True ush1g
XM_022671425.1 mRNA downstream 29458 17841976 ~ 17855162 (-) False ush1g
XM_022671421.1 mRNA downstream 67538 17807074 ~ 17817082 (-) True LOC111192966
XM_022671442.1 mRNA downstream 86811 17782752 ~ 17797809 (-) True LOC111192974
XM_022671180.1 mRNA downstream 152921 17721129 ~ 17731699 (-) True stk19
XM_007243061.3 mRNA upstream 432522 18353333 ~ 18356495 (-) False LOC103047157
XM_007243060.3 mRNA upstream 432522 18353333 ~ 18356495 (-) True LOC103047157
XM_022671182.1 mRNA upstream 568841 18489652 ~ 18536743 (-) True LOC103034879
XM_022671440.1 mRNA upstream 618092 18538903 ~ 18550973 (-) True LOC103028836
XM_022671419.1 mRNA upstream 646866 18567677 ~ 18575169 (-) False LOC103028209
TU87272 other downstream 287075 17586845 ~ 17597545 (-) True LOC111192911
TU87588 other upstream 7696 17928507 ~ 17931170 (-) True G64886
TU87843 other upstream 722560 18643371 ~ 18650343 (-) False LOC111192971
TU88001 other upstream 977374 18898185 ~ 18919522 (-) False G65184
TU88002 other upstream 977374 18898185 ~ 19023658 (-) True G65184
TU88053 other upstream 1359491 19280302 ~ 19284032 (-) True G65231

Expression Profile