RNA id: XM_022671460.1


Basic Information

Item Value
RNA id XM_022671460.1
length 2990
RNA type mRNA
GC content 0.46
exon number 6
gene id arhgdia
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19286835 ~ 19305457 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATCACATGCTGAGAGTATAGTCATCTAGATCATGGCTGAGCATGAACCCACCCCCGAGCAGCTAGCGGCCATCGCTGCCGAGAACGAGGAGAGCGAGGCTGTGAACTACAAGCCCCCGGCACAGAAGAGCCTGCAGGAGATCCAGGAGCTGGACAAGGACGACGAGAGCCTCCGCAAATACAAGGAGGCTTTGTTGGGCGCAGCATCTGTAGATATAGATCCCTCCGCGCCCAACGTCCAGGTGACACGGCTAACTCTGATGTGTGAAACTGCTCCTGCTCCTCTGACCCTCGACCTTCAGGGAGACTTGGAGAGCTTTAAGAAACAGTCGTTTATACTGAAAGAAGGAGTGGAATACAGGATAAAGATCAGCTTCAAGGTGAATAAAGAGATCGTCTCAGGACTGAAGTACGTACAGCAGACGTACAGGAAAGGAGTGAAGCTTGACAAGTCCGACTACATGGTGGGAAGCTACGGGCCTCGACCGGCCGAGTACGAGTTCCTGACCCCGCTGGAGGAGGCGCCGAAGGGCATGCTGGCCCGCGGGACCTACAACATCAAGTCCAAGTTCACCGACGACGACAAGCACGACCACCTGTCCTGGGAATGGAACCTGAACATCAAGAAGGACTGGAAGGAATGAGCCGTTCCTAAATTCCAGCCGCTTcactttttctttagttttttttcctctctgacttccctcctcctcttcctcctcctctcctcctcttcgtCAGTATGCctccatcattcatcatcataatgGATTATCTGGTTATTCAACAAAAAATCAaaatgctctctttctctcttctctcactccgTCCACCTTCCTACCTTCCATGTCATCTTCTCCCTCGTTATCCCTTTGCCCCGCCCCTTTCTCCCTCGTTCTCCCATCCACCACCTACATTTGAGTATTGAGgctttgaaaaatatatatgtaaaaagcaaacaaaacgTGCACAATccaatttttgtgtttttggtttgtttgttatataaaaatataaaaagaaaaaaaagagagaggaaaacgTATTCAAAAACTGAACGAAAATACCTGGACGCTTTTGACATGGCTGTTATTAGTAATCTTCTTCACATGCTTCACTAAACACTTCCTTTCCCTCCCGTTTCCTAAATCCAAAATTACCCAGATTTCCTCCCCTCTCCACTCTCGTGCTCTTTTTATCCTTTTCTTCCTTGTCGTCAACATTCCTTTCCTTTTCGTTAATTTTTCGttcttttttaagtatattaattacattattaccaTGATCTGCCTTGTGATGAGAGTAATGTGGAGTAATGGTGCCGATAATAATGCTAACATGTCGCTGGCGTTCGCTCGGATCCGGCGGCGTTCCTCCTCCACCCGGAGGAACAGTACTGAACGTGTCTTGTCTTTATGCCTtttgagatgatgatgatgaagatgataatgatgatgatctgTGTACAGTGGTGAAGCTGACGTCTGTAGAACTGTGTATTAATATACGTTGGGCTGACGGCGGCGTGCGGGTCCTGTTTGTGTTTGGCTGAAATGGAAACGTGAGGATGTACGTTTGTACGTGATTTTTTTTACGTATAGGGTGTATGATCAGCCTCTTGCCATCAttagtaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttctcccgTGACCGTTTATTTCGCCATGTGGCCTTAATATAATTCCTGGTAGCGTGATTTTGAGGAGCTCTTTGccttttttaaagtgtaaaaaaaaaaacggtatgAGATCGCTGAAGCCCCGCCCCCGGAGCCCCCGGCTCATAATGCTGCTCCTCGTCGGAAACACTCGGCTCTTATCGACCGTTTCGTTCGGTGCCTCGTCGTCCAATTGGCTTGATTCAGGATGGACCAATTATAAAGGCCAGTAGAAGTAAAACCGTGATTCTGAAAAACACTTTCAGCCCCTCCTTCCGGCGTGATTGAAGGTGCGGAGTTTAGTGTTCGGAGTCAGTGGACTCGTCGTATTGGTGTAGTGCAGTATCGCCGTTAGCGGTGTTATCcgctgcaccacaccaaccacacctTTATTCTTTTTGGTTTGTTCTTGTTATTTTTATGAACATTTCCCGATTCTACAAAAGGCAGGAGTTTAAATCTGTGGAATGTGCTCTTCGCCTTGTGGTCAGCAAGTGCTGTTGAGTTTACTCAAAGCAGAAAGGGCTGTTTTCACTCGCAGACCTTAAACTTACTGCACCACCGACGAATTACAGACATCACTGACTGTGCCTCCTCCATGTACAATCACAAGCTGCTTACAAACATCTGTGGAACCTGAGAGGCGTCTGACCTGAAGTCAGAACTTTAAAGGCCTCGGCGTTCGTCCTGCGAGTTCTCGAGAGTTGCGTTCGCTTCCGGACGGCGTCTCCACAGGAAATCCGCGAGGCCGTAAGTTTCTGTTCAGTCTTTTCGGCTGAGGGCCGGAGTGTTGCAGGTTTTGGTTCTAAActgatttatttcattgttcattaaggcatttaaataatttaaaattgaaGAAAGGATAAATTTGAGAATATTTGTTTGTAGGGATTAATTGAGCTTCTGATTGGGTGGAATGAACTCCGGCCCTTTCCTGATAAGACTGGACGCTCCTGCTTTAGTGAAGTTTGAGAGGAACGAGGTTCGTGAGTCTAAACTCGAATCTGAACGATCCGAATCCTCTCGACCCTCCAGTCCGGCCGTGGATCTCCTCCAGGTTTAAACTGGGATCAGTAAAGTAAAGATGTGCCCggtgttttatttatacactccttttacttttatttgtctttgtttttcttaCTTTCTCTAAACGGCCTTGCCCGAAGCGTCGGGTGGAGATTTGTtttgctgctgcttcttctctTCAGTTGGTCTTTCTGTACTGCGATCACTGTGTTGTTGGAGATTACTGTTCATCTGTGTCAACATTAAAAGTGTTCAGAATGGA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005737 cytoplasm cellular_component
GO:0005094 Rho GDP-dissociation inhibitor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87943 lncRNA upstream 9183 19224014 ~ 19278071 (+) False LOC103045528
TU87953 lncRNA upstream 29671 19254361 ~ 19257583 (+) True G65150
TU87954 lncRNA upstream 31738 19253483 ~ 19255516 (+) False G65150
XR_002650195.1 lncRNA upstream 34805 19250226 ~ 19252449 (+) True LOC111192982
TU87942 lncRNA upstream 34839 19247531 ~ 19252415 (+) False G65145
TU87995 lncRNA downstream 288454 19593911 ~ 19594223 (+) True G65178
TU87992 lncRNA downstream 295431 19600888 ~ 19601638 (+) True G65176
TU87999 lncRNA downstream 304008 19609465 ~ 19610521 (+) True G65182
TU88000 lncRNA downstream 305455 19610912 ~ 19611872 (+) True G65183
TU88156 lncRNA downstream 425020 19730477 ~ 19730879 (+) True G65301
XM_007241718.3 mRNA upstream 3221 19280292 ~ 19284033 (+) False alyref
XM_022671461.1 mRNA upstream 7737 19277004 ~ 19279517 (+) True LOC103044219
XM_022671456.1 mRNA upstream 15407 19268422 ~ 19271847 (+) True LOC103043906
XM_022671184.1 mRNA upstream 38102 19223209 ~ 19249152 (+) True LOC103045528
XM_022671183.1 mRNA upstream 108667 19177002 ~ 19178587 (+) True LOC111192912
XM_022671462.1 mRNA downstream 63057 19368514 ~ 19399220 (+) True cd36
XM_007232716.3 mRNA downstream 264529 19569986 ~ 19598049 (+) True LOC103040257
XM_007232717.3 mRNA downstream 264529 19569986 ~ 19598049 (+) False LOC103040257
XM_007232710.3 mRNA downstream 310153 19615610 ~ 19660520 (+) True kmt2e
XM_007232711.3 mRNA downstream 310153 19615610 ~ 19660520 (+) False kmt2e
TU87957 other upstream 8439 19276802 ~ 19278815 (+) False LOC103044219
TU87714 other upstream 663755 18619860 ~ 18623499 (+) True G64990
TU87328 other upstream 1567826 17690209 ~ 17719428 (+) False G64698
TU86972 other upstream 2399059 16864518 ~ 16888195 (+) True LOC103030423
XR_002650196.1 other downstream 475206 19780663 ~ 19794279 (+) False LOC103037311
TU88511 other downstream 1651678 20957135 ~ 20957635 (+) True G65565
TU88525 other downstream 1718718 21024175 ~ 21024574 (+) True G65575
TU88777 other downstream 2324405 21629862 ~ 21684834 (+) False gen1
TU89211 other downstream 3634145 22939602 ~ 22949192 (+) False ccdc167

Expression Profile