RNA id: XM_022671479.1


Basic Information

Item Value
RNA id XM_022671479.1
length 6382
RNA type mRNA
GC content 0.50
exon number 31
gene id ppfia2
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19839195 ~ 20054048 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGACCGTTGGGATTATGCTTTTGAAATAGCTCGGTATAATATGGGGTTTTACTCCaacaaagagtaaaaaaaaaaaccctaaacccATGTGTTTAAAGGATTTACACTCCGTAGTAAAGGAGCTACAGTACTGGACGCTTTTGGAGGAGACTGACCTGTTAGGACACTGCTGAATATAATGTTTTGGCTGGTGGAGTTTACTCGGACGCTGCTGAAGCAGGTGAAGATGATGTGTGAGGTGATGCCCACGATAAGCGAGGACACGGCCATGAGCCAGCGAGGCTCTCAGAGCAGCGCCTCGGATCCGGACTCGCACTTCGAGCAGCTGATGGTGAACATGCTGGACGAGCGGGACCGTCTGCTGGACACTCTGAGAGAGACTCAGGAGAGCCTGGCACTCGCCCAGCAGCACCTGCAGGACGTCATCTACGACAGAGACTCCCTACAGCGCCAGCTCAGCTCCGCACTGCCACAGGAATTTGCAGCCCTGACGAAGGAGCTGAACGCCTGCCGGGAGCAGCTGctggagaaagaggaggagattTCAGAGCTGAAGGCCGAGAGGAACAACACCAGGCTGCTGCTGGAGCATCTGGAGTGTTTGGTGTCGAGGCACGAGCGATCGCTCCGTATGACGGTGGTGAAACGTCAGGCCCAGTCCCCCTCAGGAGTGTCCAGTGAGGTGGAGGTCCTTAAGGCCTTAAAGTCACTGTTCGAGCACCACAAGGCCCTGGACGAGAAGGTGAGGGAGAGACTGCGTGTTTCACTAGAAAGAGTATCCGCCTTGGAGGAGGAGCTGACTGCTGCCAATCAGGAGATTGTTGCCTTACGGGAACAGAATGCCCACATTCAGAGGAAGGTGGCATCAGGAGAGGGAGAGGACCTTCTGGAGACTGCTGATCAGAAAGTCCATGGCAAGCGTATGTCGAACGGCTCTCTGGAGTCCGGGGACGAAGCGGGTCAGGTggtggagctgcaggagctgctggAGAAGCAGAACTTTGAGCTGGCCCAGATGAAGGACCGGATGTCCTCACTGTCCTCcagagtgtgtgaggtggagcAGGAGCTGGAGACAGCCCGCAAAGACCTAATCAAGAGCGAGGAGATGAACAACAAGTACCAGAGAGACATCAAagaggccaTGTGTCAGAAGGAGGATATGGAGGAGCGGATTGTAACTCTGGAGAAACGTTACCTCAGTGCCCAGCGAGAGTCCACCTCACTGCACGACATCAGCGATAAACTGGAGAACGAACTGGCCAATAAGGAAGCTTTCCTCAGACAGatggaggagaagaacaggcAGCTGCAGGAGCGGTTGGAGTTAGCTGAGCAGAAGCTGCAGCAGACTATAAGGAAAGCAGAGACGCTGCCGGAGGTGGAGGCTGAACTCGCTCAGAGGATAGCTGCTCTTACTAAGgCAGAGGAAAGGCATGGCAGTATTGAGGAGCGAATGCGACAGTTAGAAGGGCAGCTGGAGGAGAAGAATCAGGAACTTTTGAGGGCTCGTCAGAGGGAGAAGATGAATGAGGAGCACAATAAGCGTTTGTCGGATACAGTGGACCGCCTGCTAACAGAGTCTAATGAGCGGCTCCAGCTACATCTGAAGGAAAGGATGGCAGCACTAGAGGAGAAGAATGTTTTAATACAGGACTCAGATAGTTACAGAAAACAGCTGGAGGACTCCATTCATGAAAAGGGTCAACTGGCGGAGGAAATTGAAAAGCTCAGGTCAGAGCTCGACCAATTCCGCCTGAGGGCAGGGTCACTAACGGAGCCAACGCTATCacgGTCTCATCTGGATGCATCAACAGAGCTGCGTTACTCTCTGGGCTCTCTGGCAGAGACTCAGTCTGACCACTACCGCTCAGCCAAGGTCATCCGCCGACCGCGAAGAGGCCGCCTGGGGCTCCGGAGAGACGAGCAGAAGGCAAAGTCTCTGGGTGAGCAGGAATGGAGGTCGCAGCAGCTGGGCATACTGGGTGGCCATCCATTTGAAAGTGATACAGAAATGTCGGACATAGATGACGACGACAGGGAGACACTTTTCAGCTCGATGGACCTCCTGTCCCCCGGTGGTCACTCGGATGCTCAGACACTCGCCATGATGCTGCAGGAACAGCTAGATGCCATTAACAAGGAAATACGGCTGATCCAGGAGGAGAAGGAGTCAACGGAGCTGCGGGCGGAGGAGATCGAGAACCGTGTAGCCAGTGTGAGTTTGGAGGGATTAAACCTGGCTCGAGCTCATCACCCCGCAGCCTCCATCACCGCCTCTGCTACAGCTTCATCACTGGCCTCCTCATCACCACCCAGCGGCCATTCTACCCCCAAACTCACCCCCCGCAGCCCCGCACGCGACAAGGAGCGCATGGGGGTCATGACCTTGccCAGTGACCTGAGGAAGCACAGGAGAAAGattgCAGCAGTAGATGAGGACGGTCGGGAGGATAAAGCCACTATAAAGTGTGAAACATCTCCTCCTCCCACGCCACGCCAAGTCCGcatgacacacacactcccagcaTCCTCACACAATGACGCACGgctgGCTGCTACATTAGAGACAGAAGCCAGTGCGCTGAGCAGTGTAGCTAGCAGCCAGGACTCGCTCCACAAACAGCCgaagaaaaaaggaataaagTCCTCTATCGGCCGGCTGTttgggaaaaaagagaaaggcagACTGGGACAGCTGGGAAAAGATATAATGGGACCAGGACAAGGAAACGTGTCTGACCCGGAGTTACTGGGTCAGGAGATCGGTGTGAGTAAACTGGGCACTCAGGCAGAGAAAGACCGCAGGCTGAAGAAAAAGCACGAGTTGCTGGAGGAGGCAAGGAGGAAAGGGCTGCCCTTCGCTCAGTGGGACGGCCCAACTGTAGTAGCTTGGCTGGAGcTGTGGTTGGGGATGCCAGCGTGGTATGTGGCAGCGTGTCGTGCAAACGTGAAGAGCGGGGCGATCATGTCAGCACTGTCGGACACGGAGATCCAGCGAGAGATCGGGATCAGTAACCCCCTGCATCGCCTCAAACTCAGACTGGCCATTCAGGAGATGGTCTCACTGACCAGCCCCTCAGCCCCACCCACAACCAGAAccCCTTCAGGCAATGTGTGGGTGACCCACGAGGAAATGGAGACGCTTGCAGCCCCCTCTAAAACGAAATCCGAGTCAGAGGAGGGAAGCTGGGCTCAAACTCTGGCGTATGGGGATATGAATCATGAGTGGATTGGAAACGAGTGGTTGCCCAGTCTCGGCCTACCTCAGTATCGCAGCTACTTCATGGAATGCCTGGTGGATGCGCGTATGCTCGATCACCTGACCAAGAAGGACCTCAGAGTGCACCTGAAGATGGTGGACAGTTTTCACAGAACCAGTCTACAGTATGGAATAATGTGTCTAAAGAAGTTGAACTACGACCGCAAGGAGctggagagacggagagagaccAGCCAACACGAGATGAGAGatgtTCTGGTGTGGAGTAATGAGCGGGTGATTCGCTGGGTTCAGAGCATTGGTCTTCGGGACTACGCAAACATCCTCCTGGAGAGCGGTGTGCACGGAGCGCTGATAGCCCTCGACGACAACTTCGACTACAGCAGCCTGGCACTGCTGCTGCAGATCCCCAACCAAAACACTCAgGCCCGTCAGATCCTAGAGAGAGAGTATAATAACCTGTTGGCGCTGGGAACTGAGAGACGTCTAGATGAGGAGTTTCGGGGACCCTCGTGGAGACGGCAGTTTCCTCCCCGGGACATCCACGGGATCAGCATGATGCCCGGATCAGCCGAGACGCTGCCAGCAGGATTCCGCCTTACAGCCACATCAGCACACTCCCGCAGACTACCACCAGAggTTGGGCCATCAGCAGTGCAGCGGCTGGACAGTTCCACTGTGAGGACCTACTCCTGCTGAGAGAGGGAGGACCCACTCACTGAActaTGTATTTTCTAGATGAGTCTTATCGTATTGTTGTGGGAAAAGGTCCCCGGGCCTGGACGGAGAATTCTTCAGAGTCACACTGCCAAGAGAACAAATGTTGCTCCAAGGGAGAGGGGCAGAAGGGGGCAGGGGATTGCCAGATTCCCCTCCTGCCCCCCAATGTCTACGTAAAAATAAGCCAAGGCCACAACCCAGGCACCTTGTCGAGGTGCTAATTCACTCCTGCCCTTTCTACCTTTTACACGACCCTCGTCCCTCCGTGCACCTGCAGTGCCACTATTCTACATGGGACGTGCAGGTTTAGCTGTAAATGACTATAAATAcgctgttttttatataaatatatatctataaaacatGTCTgtataaaagaagaagaaaaagaaaaaataataatatgagaATATATTCAAACTTTGTGCAGATTTTGTCCCttaatgtaatttgtaattcaCCTCTGGTTTGGCGGGAAGCCTGCGCCGTACAGTTAGAGCTTCCTTCTGCTCCGACACGACCGACCCGGCGTCTATTTAGCCGTAAGCTTCAGTATGGAGTGGATGTTGGAGGAGGGGAAACATGAACTGTACAGTAAAGGCATCGCAGGACTGGAGTGGAGAACCACTGGTTTAAACAGTGCTGCTCTTTAAACGGAGAGAGGACTACATGCTGTTTCGTTGTTTTTTCGTTTCGTTTTTCTTTGgttttctcgccatcgtgtggACGAGTGTGTTGAGGTCCTTCATGCTCTGCTGGTTCCCGTCGAACACAGGCAAACACCTTACCCATCACACACTCCGGAGTGAAACCCTCTGAAGGCTGTTTCAGACTGTTTTTGTTGGGATTGTGCAGTTCTAGAATTTTGAAAGTGGTTCTAGAATGTAGAATGTGGTAGAACTTCGTCTTAGATGCCATTGTGACATCATACATAGAGACTCTCTTGATGCAACATTCCCGTCGTCTGGCACGACAGTCGTGTCACTgatgaaagggttaaatatttGAGCCAGGGTTTGGCGCTGCTACAAGTGGCCTACACCACTGTTCTCCCTGTACTTCAACGCTATTGCAAGCAATTTACAGGTTCAAGATGGGCACTGTTCTGAATGGTTCGTTTGGCACTATATAGGGACCTAGTGAGAATGcctttattttaacaattaaacattttccaAACCCTTTGGAACTCTAAACAATGCAGTGCACAAATATGTATAATTTCTTTACTTCATTGCTCTTAAGGTCTTGTGGGATGCCACATAATATGCTAACATAAAACAGCTTACAAATCATTTTCGGTTCCAGCAAGGGGATATAATAACCAACTATTAAATATAGGGTTTAAAAAGTCCAAGGGCCTGCAGTTGTGGGGTTAATTCCCACACAGGTCATTGTCTTCAGTTGGGTGTGTTCTCAGCAAATTAGCTATGATTAAATGCCCCTAGGCATGAGTGAATGCTTGTGTGTACCCTGTGATGGACTGGCAGAATTCCTTGAGCCCAATTATTCCAGGTAAGCTCTGGACCCACTGCAATCTGAACATGGACAAATTGGTTAAATGCAGGGGTTCTTAACCTGGGGATGTGACACCCTCCCTGGGGGATGGTGAGGGTGATGCTGCACGTTGTATGTGACTGGAACTCTTAAAGCTCATCAGAGTGCAGTTAAAacgatgattaaaaaaaaactataccccaccatctttactgaacGTTATTTTACTAAACTTAACGTATATAGAAGTATATCTGACTAAAAATTGCagaatgaataatgaataaatctactaaacaaaagataaaatatatgtgtacatttctttgtattgtacattttgGTTTGACATCACAAGGTCGCACAGGAAACTCTGCCAAAGAACCTCCCTAAGAACCAATACAAAGGCTAGTGCCCTATGTAGTGCACAGGTTTTGCCAAATATGGGGTTATTCGATATAAGACTGAACTCAATTTCAGTTTCAGAAACTCATTACTCTACAAACAGCACCGCAGACCACCACCAACCACCCCACCGGCTTCACCTCGATAACAGCCACACCCCCTCTTCAACACTGGTAGGAGAAATAACTACAAGACAGGCGTAGCTCCTAGTGAACGTAGAGTGTATATCAATTGTCGAAGTCCAGACTAAACTTTTAAAAGATGAACCTGTTGCTTTCTGTGACTTATTTTGGTGTAAAACTGTTGAACTATTTTCTGTAGAAGTTGCGGGGTAACCTCTTGTACAGAACCTCCTTCCTGTCTTCGAGTTATTTCTGCCGCAATGCGGATCTGCAGAGTTTATACATCCTCGTTTTGCACGTACAgagaaatcattttattttgtgtccatttttttatttattactgattgtatTTTGGTCAAAACTATGTGGTGATCAAAGAGAATTTTCATTGTCAATAAAAAGTAACGTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88170 lncRNA upstream 32595 19804626 ~ 19806600 (+) True G65311
TU88168 lncRNA upstream 34093 19803175 ~ 19805102 (+) True G65310
TU88161 lncRNA upstream 92004 19743884 ~ 19747191 (+) True G65306
TU88156 lncRNA upstream 108316 19730477 ~ 19730879 (+) True G65301
TU88000 lncRNA upstream 227323 19610912 ~ 19611872 (+) True G65183
TU88293 lncRNA downstream 97185 20151233 ~ 20151557 (+) True G65404
TU88294 lncRNA downstream 113099 20167147 ~ 20167452 (+) True G65405
TU88292 lncRNA downstream 119322 20173370 ~ 20174743 (+) True G65403
TU88319 lncRNA downstream 168052 20222100 ~ 20222899 (+) True G65427
TU88328 lncRNA downstream 179938 20233986 ~ 20234618 (+) True G65435
XM_015601151.2 mRNA upstream 44870 19780663 ~ 19794325 (+) True LOC103037311
XM_022671465.1 mRNA upstream 59732 19749310 ~ 19779463 (+) True golgb1
XM_022671466.1 mRNA upstream 59732 19749310 ~ 19779463 (+) False golgb1
XM_007232708.3 mRNA upstream 111024 19715788 ~ 19728171 (+) True orc5
XM_007232713.3 mRNA upstream 178675 19636666 ~ 19660520 (+) False kmt2e
XM_022671483.1 mRNA downstream 101007 20155055 ~ 20173304 (+) True lin7a
XM_007232805.3 mRNA downstream 208532 20262580 ~ 20266197 (+) True rps16
XM_022671485.1 mRNA downstream 245654 20299702 ~ 20397903 (+) False ppp1r12a
XM_022671488.1 mRNA downstream 245654 20299702 ~ 20397903 (+) False ppp1r12a
XM_022671490.1 mRNA downstream 245654 20299702 ~ 20397903 (+) False ppp1r12a
XR_002650196.1 other upstream 44916 19780663 ~ 19794279 (+) False LOC103037311
TU87956 other upstream 498316 19280300 ~ 19340879 (+) True alyref
TU87957 other upstream 560380 19276802 ~ 19278815 (+) False LOC103044219
TU87714 other upstream 1215696 18619860 ~ 18623499 (+) True G64990
TU87328 other upstream 2119767 17690209 ~ 17719428 (+) False G64698
TU88511 other downstream 903087 20957135 ~ 20957635 (+) True G65565
TU88525 other downstream 970127 21024175 ~ 21024574 (+) True G65575
TU88777 other downstream 1575814 21629862 ~ 21684834 (+) False gen1
TU89211 other downstream 2885554 22939602 ~ 22949192 (+) False ccdc167
TU89229 other downstream 2945322 22999370 ~ 23003421 (+) True c7h11orf98

Expression Profile