RNA id: XM_022671484.1


Basic Information

Item Value
RNA id XM_022671484.1
length 3601
RNA type mRNA
GC content 0.57
exon number 28
gene id ppp1r12a
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 20299702 ~ 20397967 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aagagagagagagagagagtctctcacacacacacacacgcacggtTAACCCGCGGGCTGAGGACTGGAGGATTGAGACTCACACGGAGGGAGAGCGCACCGGCTCCGGGGGGGGTTAGTGCTGTGTTGTGATGAAGATGGCCGACGCTAAGCAGAAGCGGAATGAGCAGCTGAAGCGCTGGCTAGGCTCGGAAACCGACCTGGAGCCGCCGgttctgaagaagaagaagactaaGGTGAAGTTCGACGACGGCGCGGTGTTCCTGGCGGCCTGCTCCAGCGGGGACACCGAGGAGGTGCTGCGGCTGCTCGACCGCGGCGCGGACATCAACTATGCCAATGTGGACGGCCTGACCGCCCTGCACCAGGCCTGTATAGACGATAACGTGGACATGGTGACCTTCCTGGTGGAGCATGGCGCCTGCATCAACCAGCCAGATAACGAGGGCTGGATTCCCCTCCACGCTGCCGCCTCCTGCGGATACATGGACATCGCAGAGTATTTAATCAGTCAGGGTGCGAGTGTAGGCGTGGTGAACAGCGAGGGCGAGACGCCGCTGGACATCGCTGAGGAGGAGGCCATGGAGGAGCTTCTACAGAACGAGATCAACCGGCAGGGAGTGGATATCGAGGCGGCGAGGAAAGAGGAGGAGCGGATCATGCTGCGGGACGCTCGGCAGTGGCTCAACAGCGGCCAGATCAGCGACGTCCGGCACGCCAAATCCGGAGGAACCGCACTGCATGTCGCCGCTGCCAAGGGCTACGCTGAGGTTTTAAAGCTTTTAATCCAGGCAGGTTATGatgtaaatattaaagattATGACGGCTGGACGCCGCTGCACGCTGCTGCTCACTGGGGTAAAGAGGAGGCCTGCAGGATCCTGGTGGAGAATCTGTGCGATATGGACCTCATCAATAAAGTGGGTCAGACGGCATTTGATGTAGCTGATGAAGATGTTTTGGGCTATTTAGAAGAACTGCAGAAGAAGCAGAATCTGCTAATGAGTGAAAAGAAGGATGTTAAGAAATCTCCGCTGATAGAAACGACGACCACCGGGGACAATAATCAATCTGTGAAACCAGTCAAGAGTAAAGAGACGCTGTTGCTAGAACCAGAGAAGAATGCTCCACGTATAGAGACTCTAGAACCAGAGAAAgtggatgaggaggaggaggggaagaaggatgAGTCCAGCTGCTctagtgaggaagaggaggaagaagattCAGAATCTGAAAATGAAGCAGACAAGACCAAGTCTTCTGCTCCGGTCAGCAACTCCACCTCCAACAGCACAGCCCCCACTCCTGCCTCCGCCCACACTAGCATCACCGTCTCCTCCCCCACCAGCCCCACCAGCCCCACCAACCAGGTGACCAGCCCAACCTCACCTCTCAGAAAGTCTGATTTAATTGCTGCCCTCAGTCCGGCGGCGGGTGAAGCTACTTGTCCTGCATTGTGGCGTCAAGGCTTGCGAAAAACTGGCATTTCTCTTGTGCCCAAAAAAGCGATGGTGGCTGTACCTGCTGGAAAGACGTCCCAGGTGTCTCCTAAGGAGGAGGAGCGTAAGGACGAGAGTCCTGCCTCCTGGAGGCTGGGTCTGAGGAAGACTGGCAGTTACGGTGCGCTGGCGGAGATCAGCGCCACTAAGGAGGCTCAGAAGGAGAAGGATACGACCGGAGTGATGCGGTCAGCTTCCTCACCTCGTCTGTCCTCCTCACTGGACAACAAGGACAAGGAGAAGGAGAAGGAGAAAACCCGTTTAGCGTACGTCGCTCCCACCATCCCCCGCAGACTGGCCAGCACTTCAGACATCGATGAGAAGGAGAACAGGGACTCGGCGGCTAGCCTGGTGCGCAGCGGTTCGTACACTCGGAGGCGCTGGGACGAGGAACTGAAGAACAGCGATGGAACCACAACACAGAACCGAACTTCCAGCTACCAGCGCAGCACCTCCCACTCTCTAACCCTCGGCCGCAGTGGCAGCTCCCGTGACCTCCCGGCCAAGTCGTCCTCTGCTTCCAGCCTGGAGCCTAACAGCACTAAAGCCTGGCAGTCCCCGCACTCCTCCTACAGCCAGGCTTACAGCATACACCGCAGCGGTTCGTTTGGGAGGAGGCAGGATGATGCTGTGACCTCCACAGCCTCCAGCTCCTCCGTTACCACCACCACGAGCACCACCTCCTCCATTACCTCACCTACAGGTCATcgcaggtattgGTCGGAGGACAGTGCTGATAAAGAGAAGGAGTCAGCAACTGTAATCCCAACCATCAACACTGCAGCCACCActaccacctccacctccaccactgGCACTATACTGGGTTCCGACGGCAGAGAGAGACGCAGATCGTACCTGACCCCGGTGCGAGATGAAGAGTCGGAGTCTCAGAGGAAAGCTCGGTCCCGTCAGGCCCGGCAGTCCAGAAGATCCACTCAGGGCGTGACCCTGACTGACCTCCAGGAGGCGGAGAAGACGATTGGCCGCAGTCGCCCCATGCGGAccagagaggaggagaagcagGACAAAGAGAAACAGGATAAGGAGAAGCAGGAGGCTGAGGCCAAGGATACCGAGACCAAGGAGGACGATTACAGGTCTCGCTATCGCCCGCTAGAGGAGcGCTACCGGACTTCTTCCCTGAGCTCTTCCTCCACCACAACAGCCTCCACACTgccctcctcctccagcagctcctcGTCCCTCTacaccacctcctcctccttacTCAACCGGCCCAACAGCCTGAGCGGCATCAGCTCTGCCTACAGCCGCTCTAGCTCCGCCCGCGACGCAGAGAAAGcagaaGCTGATAAGAGAGAGGCGGAGAAGGACGCGGAGGATAAGGGTCAGCCTCGTTCCATACGGGATCGCCGACGACCGAGAGAAAAACGGCGCTCCACAGGAGTCTCTTTCTGGCCCCAGGATagtgATGAGAACGATCCGGAACAGCAGTCCGACTCCGAGGAGGGAAGCACTAAAGGAGACATTCAGAGTGACAGACTGTCCAGAAACGATGCTCTGTCCTCTAGCACGTCCTCTACTGATCGCTATGAGCACCTGGACAGCCGCAGCTACAGAGAGGGCCGCCGGCCGTACTCACGACTGGACAGAGACGATAGCACTGATTATAAGAAGCTTTATGAACAGGTTCTAGCTGAAAACGAGAAGCTGAAGGCTCAGTTACGTGATACGGATCTGGAACTGGCGGGTCTGAAGCTACAGCTGGAGAAGGCCACCCAGagaCAGGAACGCTTTGCTGATAGGTCACAGCTGGAGATGGAGAAAAGGGAAAGAAGAGCTCTAGAAAGGAAGATATCTGAGATGGAGGAGGAGCTTAAGagtCTGCCTGAGGTACAGCGGGTGCGTTGTCTGCGAGGGTATAATGAGCGATTGCAGGCGGAGAACCGGGCTCTGGCTCGGGCGCTCTACAGCCTGTCTCTGACTCCGCCCTCCGCCGACCTCTAAAACCTCCCCCCACCCACACGCACACCCCAGCCCCGCCTCCACACAGACGCTACCAGACTTGAAAGCCGACAACCAGAGACTGAAGGACGAGAACGGCGCTTTGATCCGAGTCATTAGCAAGCTTTCCA

Function

GO:

id name namespace
GO:0035507 regulation of myosin-light-chain-phosphatase activity biological_process
GO:0030155 regulation of cell adhesion biological_process
GO:0051017 actin filament bundle assembly biological_process
GO:0001889 liver development biological_process
GO:0072357 PTW/PP1 phosphatase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0071889 14-3-3 protein binding molecular_function
GO:0019208 phosphatase regulator activity molecular_function

KEGG:

id description
K06270 PPP1R12A, MYPT1; protein phosphatase 1 regulatory subunit 12A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88328 lncRNA upstream 65085 20233986 ~ 20234618 (+) True G65435
TU88319 lncRNA upstream 76804 20222100 ~ 20222899 (+) True G65427
TU88292 lncRNA upstream 124960 20173370 ~ 20174743 (+) True G65403
TU88294 lncRNA upstream 132251 20167147 ~ 20167452 (+) True G65405
TU88293 lncRNA upstream 148146 20151233 ~ 20151557 (+) True G65404
TU88379 lncRNA downstream 102871 20500774 ~ 20501708 (+) True G65471
TU88374 lncRNA downstream 108804 20506707 ~ 20508287 (+) True G65468
TU88376 lncRNA downstream 108804 20506707 ~ 20507235 (+) False G65468
TU88375 lncRNA downstream 109472 20507375 ~ 20508447 (+) False G65468
TU88392 lncRNA downstream 153290 20551193 ~ 20552933 (+) True G65476
XM_007232805.3 mRNA upstream 33506 20262580 ~ 20266197 (+) True rps16
XM_022671483.1 mRNA upstream 126399 20155055 ~ 20173304 (+) True lin7a
XM_022671477.1 mRNA upstream 245655 19909173 ~ 20054048 (+) False ppfia2
XM_022671492.1 mRNA downstream 19609 20417512 ~ 20497661 (+) True pawr
XM_022671495.1 mRNA downstream 195763 20593666 ~ 20595301 (+) True LOC111192985
XM_022671510.1 mRNA downstream 1012946 21410849 ~ 21438210 (+) True tmem214
XM_022671511.1 mRNA downstream 1012946 21410849 ~ 21438210 (+) False tmem214
XM_022671504.1 mRNA downstream 1042506 21440409 ~ 21547440 (+) False agbl5
XR_002650196.1 other upstream 505424 19780663 ~ 19794279 (+) False LOC103037311
TU87956 other upstream 958824 19280300 ~ 19340879 (+) True alyref
TU87957 other upstream 1020888 19276802 ~ 19278815 (+) False LOC103044219
TU87714 other upstream 1676204 18619860 ~ 18623499 (+) True G64990
TU87328 other upstream 2580275 17690209 ~ 17719428 (+) False G64698
TU88511 other downstream 559232 20957135 ~ 20957635 (+) True G65565
TU88525 other downstream 626272 21024175 ~ 21024574 (+) True G65575
TU88777 other downstream 1231959 21629862 ~ 21684834 (+) False gen1
TU89211 other downstream 2541699 22939602 ~ 22949192 (+) False ccdc167
TU89229 other downstream 2601467 22999370 ~ 23003421 (+) True c7h11orf98