RNA id: XR_002650202.1


Basic Information

Item Value
RNA id XR_002650202.1
length 2950
RNA type misc_RNA
GC content 0.43
exon number 17
gene id rpap3
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 24367492 ~ 24383022 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGAATATCTCTGTTCGGGTTTATTCGCAAAGGCTGCTGGTAGTTGGCTGTCATGGCGCTGAACCCAAACAGACAAGATCAGCGTGCGTTCTGCTGAGTAACGAGactgaaaaaaacactgcagcatGTCGGGGGGCAATAAAGCCATTGAGCTGCAGATGCAGATGCGTCAGAATTCGGAGGATCTCCAGAACTTCATGAGGGAGCTTGAAACCTGGGAGGTcgacataaaaaagaaagatgaagAGCTTCGCACAGGAAGTGTAACAGAATCACAGAAAACTCTTCCACCTGTGAGAAACAAAGATTACAAGAAGAAACGACGCGTCAAAGGTAAAGTTCCTGACAAGAACAGCCAAGAAGAGCAGAAGCCAGTACAGAGAATAAAATCATATGATTATCAGTCATGGGAAAAGTTTGATGTGGATAAAGCTCTTGAGACAGTGGACAAAGAAGAGAGCCCAGAATCGAATGACTCTGACTCGGAGGAGGTGCAGGTGGACAGAGACCTGGCaatgaaagagaaggagaaaGGCAACCAGTTCTTTAAAGACGGAAAGTATGACGAGGCCATTGAATGCTACACCAGAGGAATGAGTGCTGACCCATACAATCCTGTTCTGCCGACAAACCGAGCAGCATCTTTCTTCagacttaaaaaGTATGCTGTTGCAGAGTCCGACTGTAACCTGGCTATAGCGCTGGACAGCAAGTACATTAAAGCCTATGCCAGAAGAGGGGCTGCACGTTTTGCTCATAATAACCATCAGGGTGCTTTAGAAGATTACGAAATGGTTTTGAAGTTGGACCCTGAAAACCTAGATGCTCAGAATGAGATCAAGAAGCTAAGCCAGTGTTTCTCCTGTCAGGCTTTAGCTTCtcaaaaacagagagaagatAAGGTAGAGAAGACTTTGGTTGAAGTGCTGCCTGCTGAGGAAGCAAAGCCTAAACACATAGAAGAGGAGCAGCAGAGAAGACAGGAGGCAGTGGTGCAGAAGGACCGGGGTAATGCTTACTTCAAGGAGGGAAAGTATGAGGCAGCTGTGGAGAGCTACACCAAAGGCATGGAGGCAGATGCCACAAATGCTTTACTCGCTGCTAACAGAGCTATGGCTTACCTCAAACTTGAAAGGTATGCTGAAGCAGAAGAGGACTGCAGTAAGGCCATTGCTCTGGACAGCACCTACTTAAAGGCTTTCGCCCGACGTGGCACAGCTAGAGCTGCTCTGGGCCATCTTACTGAAGCCAAGGAAGatTTCGAGCAGGTTCTGAGGCTTGAACCGGGAAACAAACAGGCAATGAATGAGCTGAAAAAACTGAATATGGAGATGACTTCTAGTGGGCTACAGCCGGCAGAAGGAACTCAAAGAAGAACAGTTCAACCGGTCAATAAACCAGAACATCTCAGATCTACGaagccaatgaaaagaATGGAAATTGAAGAAGTTGGTGGAGAGCTGACAGACGTAATGCAGCCTCAGAGATCGACCGCTGCTGGAAACTCCTCAAGACCTGGACCAGTGCCAAGTGTGACTGCTTCTTTCTCAGAGAGAGAAATGCAAGGTGAAGCTTCTCCACTCTCATGTTCCCCCTCTGCCAAGATCCTGAAAATCGAGGAGCTGTCAGACACTCCTTCACAACCTCCAACCAAAGACTCTGAAGGAGATTCCCTCAGAAAAAGACAGCACTGCATAAAGAGGAAAAAGCCACCGGAAGTATGGAGCAAACCTCATCCCTATCCTCTACTTCAGTCCAATCCGAGGTCATTCCTCCACCCCCCACAAACGGCTTCCAGCTAGAAGCAGACTTGAGGAAGATTGGTGATCATCTTGAAGTCAGCTACAGATATTTAAAGCAAATTCACCCTGAAGCCTACGAGAAGATTTTTCAAAACTCTCTGGAGCCTGACATCCTTAATAAGATTTTGAAAGTACTTCAGAGCTTTTACGTCAAgAATGAGGAGCCATCAATCATACTGGCAGTCCTGAAAAGCTTGTCAAAAGTGAGAAGGTTTGAGATGACTGTTATGTTCATGTCTTCTGCTGAAAAGAAAGtgATACAGGAATTATTTGAGTGTATTTCACACGCTGGACTGGAGGATGACTCAGTTCgggctttaaaaaagaaatatgaagTATAACCACTGTCTtcgggagagaaagaggagtaCTGGATTCACCTTTCTATCACTGGTCATttctcaaaacataaaaagacatCCTGTTCTCCTGCAACCTAATAATTCACCATTGTTGTATAAGACATGATTTTGTTTCTCTAAGTTGAGACTTGGAAAGTGCTAAAAGTTCCAAATGATGCAATACcagtttgtttaatttgtttgacTAGATAAACATGTTTTAGAAGTAATTAAAATGACTGGGCAGTGTTTAATAATACAGAATGTATTGTACattatgtggacaaaagtatttggacatcggcttgtttattgtttcttctgcttttatttttattaaaataaaaaaagagttgaaACCACCTGACCTCAtctccaactctccaactcattaaaagtatttaatgGAGCAcgatcatttcagagaacaccaAACTACCACATCTCAACTTATCAATGCTGGGAGTTTTGTACACCTCTAATCCATGCGGGCCAGTAAGCTTGGTGCAAGgaggtttgtgtttttctgatcCAGAGTGTCCTGTCTGTTGGAAATACTTCTTTACAGGCACTAGACAAGCTGTGGATGTGCAATTGCACATCCGTGTCAAAATGGTCCTCATTCATTCAATGTAATTTGAGTGAATTTTGCATGTGATAAGGTAGTAAAAACCTGCTCCTGAccaagtgtaaagtgtgtgacACAAAGTATAATTTGCCTTGACTGCAATTGATTTAAGTCTATGAGGCACTGTAGAGATGCTTGTGCAGGTTTTGTTATGAAATAAAATTTTGGGAGGAGGAATA

Function

GO: NA

KEGG:

id description
K23002 RPAP3; RNA polymerase II-associated protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89699 lncRNA upstream 44341 24323810 ~ 24324032 (+) True G66488
TU89690 lncRNA upstream 137187 24223005 ~ 24231186 (+) True G66480
TU89683 lncRNA upstream 181990 24186134 ~ 24186383 (+) True G66476
TU89679 lncRNA upstream 230188 24137905 ~ 24138185 (+) True G66472
TU89579 lncRNA upstream 390427 23976240 ~ 23977946 (+) True G66389
TU89739 lncRNA downstream 1897 24384919 ~ 24389774 (+) True G66514
TU89752 lncRNA downstream 25498 24408520 ~ 24414278 (+) True G66524
TU89753 lncRNA downstream 25498 24408520 ~ 24412117 (+) False G66524
TU89786 lncRNA downstream 122319 24505341 ~ 24505541 (+) True G66556
TU89790 lncRNA downstream 165195 24548217 ~ 24552340 (+) False osgep
XM_007229748.3 mRNA upstream 48307 24296917 ~ 24320066 (+) True lrig3
XM_015602945.2 mRNA upstream 250660 24026461 ~ 24117713 (+) True LOC103023565
XM_015602946.2 mRNA upstream 250660 24026480 ~ 24117713 (+) False LOC103023565
XM_007239002.3 mRNA upstream 414653 23916306 ~ 23953720 (+) False etv6
XM_022671187.1 mRNA downstream 76381 24459403 ~ 24461001 (+) True LOC111192915
XM_007229740.3 mRNA downstream 127467 24510489 ~ 24517356 (+) False LOC103034593
XM_007229739.3 mRNA downstream 127468 24510490 ~ 24517356 (+) True LOC103034593
XM_015605311.2 mRNA downstream 142345 24525367 ~ 24545081 (+) False osgep
XM_007229737.3 mRNA downstream 172579 24555601 ~ 24559622 (+) True LOC103033942
TU89518 other upstream 658297 23698152 ~ 23710076 (+) False LOC103027234
TU89474 other upstream 884440 23483333 ~ 23483933 (+) True G66303
TU89467 other upstream 923696 23444174 ~ 23444677 (+) True G66296
TU89299 other upstream 1230419 23131094 ~ 23137954 (+) False crebl2
TU89793 other downstream 135600 24518622 ~ 24526052 (+) True osgep
TU89825 other downstream 262704 24645726 ~ 24684580 (+) False lingo1
TU90292 other downstream 1706810 26089832 ~ 26092089 (+) False LOC111192916
XR_002650161.1 other downstream 3113773 27496795 ~ 27497727 (+) True LOC111192885
TU90964 other downstream 5174114 29557136 ~ 29558666 (+) True G67459

Expression Profile