RNA id: XM_022671576.1


Basic Information

Item Value
RNA id XM_022671576.1
length 4893
RNA type mRNA
GC content 0.52
exon number 20
gene id trhde
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 26285301 ~ 26778380 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggagggtggagatggagggagagatgATGATGGAGGCGCGCgcagaacacacacagcagcagcgcGAGCAGTTCTAACACACCACCAGACCGCtagattaacacacacacactaagacacatacacacacacacatcaacacacacccttgcactcacacactccctctgtctctctgtaacacacactcacactcacacatacgcCGGAGAGGGGTCCGCGCGCCGGTCCGGGAGGGATGCACGCTGAGCTCGGACGTGATCTCTCACGCCGATGGGGATCGAGGCCGTGATGAGTGCGCGGACTGGGCGTGCCCTCTCTGACCAGTGGGCAGACGGCGTGGCTGTGCGCCCACGCACCACCGAACGCCACATCACGGTGCACAAACGACTCGTTCTGGGCTTCGCTGTCTCCATCCTCGCGCTCATCGCCGTGACGGCGGTGGCAGTGGCACTTAGCGTAAAGTTCGAGCGCTGCACGGGAGAGCCTAATGGTGGGGAGGCACTCGGAGATGCTAATGCACGTTCCACGCCCGGCACGAGCGGGGCCACGGGCACAAGGACGCACGATGCACGGACCAGAGGAGAGGGGGACAACGACGATGACGACGAGGATGCTCGCTTCCCTTGGCGACGGGCGCGCCTCCCGACGACGCTGCGCCCTCGTCACTACGAGCTCACGCTCTCTGTACATATGGACAACTTCACGTTTGCCGGGTGCGTGAACATCGACGTGGAGTGTGTGAACGCCACGCGCTATGTGGTGCTGCATGCAGACGGGCTCGACATTCGCACCGTGACCCTGATGCACGCAGACGGGCGCAGGGCCGGTGCAGGAATGGTGCGTGTGCACAGGCACTTTGCGTACACGTCCTCGCAGCTGCACGTCATCGTACTGCACCGCGAGCTTAAGCCGCTGCGCACCTACAGATTGAACATCACCTTCAACGCCCGCAGAGAGAACGAGCTGCTCGGCTTCTTCCGCAGCTCCTACATGCTGCACGGGGAGAGGAGgtttcTGGCGGTGACCCAGTTTTCTCCGACTCATGCGAGGAAGGCTTTCCcgtgttttgatgagcccatctATAAAGCCACCTTTAAGGTGAGCCTGAGGCACGAGGGCTCGTACCAGTCCCTGTCCAACATGCCGGTGGAGGCGTCCACCCTGGACGAGGACGGCTGGGTCACCAATCACTTCTCCAGGACGCCCCGCATGTCCACCTACTACCTGGCCTGGGCCGTGTGCAACTTCACCTACCGGGAGGCCGTCACCGACAGCGGAGTCGTGATCCGGCTGTACGCCAGGCCCGACGCCATCCAGAGCGGATCGGGAGACTACGCCCTGCACATCACCAAGAGACTGCTGCATTTCTACCAGGATTACTTCAAAGTCAAGTACTCCCTGCCTAAATtagaCTTGCTGGCAGTGCCGAAGCACCCGTACGCTGCGATGGAGAACTGGGGTCTCAGTGTGTTTGTGGAGCAGAAGATTCTTTTGGATCCTGAAGTTTCATCTTTCTCCTACCAGATGGAGCTTACCATGGTAGTGGTGCACGAAATATGCCACCAgTGGTTTGGAGACTTGGTGACGCCGGTCTGGTGGGAGGACGTGTGGCTGAAGGAGGGATTCGCTCATTTCTTTGAGTACGTTGGCACCGACTTCCTCTTCCCCAAGTGGAACATGGAGAAGCAGAGGTTCCTGACTGACGTTCTTCACGAGGTGATGCTATTGGACGGTCTGGCCAGTTCACATCCCATCTCACAGGAAGTATTTGAAGCCACTGATATCGACCGGGTCTTCGACTGGATTGCCTATAAAAAGGGAGCAGCACTGATTCGTATGCTGGCCAACGTAATGGGACAAGCTGTGTTCCAGAGAGGACTCaatGATTACTTAATGACGCACATGTATGGGAACGCGGCGAGGGATGACCTGTGGAACAAGTTTTCTGAGGCTATGCAGAGGGAAGGGAAGGACATCAACATAAAGGAGGTGATGGACCGCTGGACGCTGCAGATGGGCTACCCTGTAGTCACCATCAGTAAGAACGACAGCTTGGGCAACACTGTCACCATCACCCAGGAGCACTTTGTCTACGACATCGAGGCCAAGCTGCGCGACCCTGACCTTTTCAACAAAAGttTCCAGTGGCAGATCCCGCTGACGCTCTCGGTGGGAAACTCCAGTCACATATCGCCCGAAACCATCATCTGGGTCTCCAATAAAACAGAGACGCACCGAGTGGGCCGCATGGAGGAGGAGACCTGGTTGCTGGGCAACATCAATCAGACGGGCTACTTCAGGGTGAACTATGACCTCCACAACTGGAGACTCCTCATACAGCAGCTTATGATCAACCCCACGATCATCTCAGTGGGCAATCGAGCAGGCCTGATTGATGACGTCTTCAACCTGGCCAGGGCTGGGTATCTTCCTCAGAACATGCCGCTGCAGATCATCTCTTATCTCTCCGAGGAGAACGAGTTCCTGCCCTGGCACGCTGCCAGCCGAGCCCTGTACCAGCTGGACAAGCTGCTGGACCGCACCGAGGACTACAGCCTGTTTAGTGACTATGTGCTGAAGCAGGTGGCACCAAAGTACCATAAACTGGGCTGGCCGAGTACCTCCGCCGATGGGTCGTTCCTGCAGGCCGCCTATCAGACAGAGGAGCTGCAGAGGGAGGTGATCATGCTGGCCTGCAGTTTCGGGAATAAACACTGCCACCGCCAAGCTGTGACCCTCATCTCCGAGTGGATATCCAACAACAAgaacagGATCCCCCCGAATGTGCGGGACATCGTGTACTGCACGGGCGTGTCTCTGATGGACGAGGACGTGTGGGAGTTCATCTGGATGAAGTTCCACTCCTCCACGGCTATCTCCGAGAAGAAGGTCCTGCTGGAGGCTCTGACCTGCAGTGATAGCAGCGTCCTGCTCAACAAGCTGCTCAATCTCTCTCTAAGCTCAGACCTGGTACCAGATCAGGACGTCATCGACGTGATCATCCACGTGGGCCGCAATCCGCACGGACGCCACTTAGCGTGGAGGTACTTCAGGGAAAAGTGGGACATGCTGAACTCCAGGTACGGCGAGGCCTTATTTATGAACTCTAAATTAATCAGCGGGGTGACGGAGTTCCTCAACACCGAGAGCGAGCTCACTGAGCTGAAGGAATTCATAGAGACGAGTGGCGGAGGGGCGGCGTCTGCTTTCGCCCGAGCCATGGAGATCGTCCAAGCCAACGTGAAATGGCACAACCTCTACAAGCAGCAGTTTTTCCAGTGGCTGAGGAAATCGCCCAACGGCTAACGCAGAACCTCGCGCCTTTTCTGCTAGCATGGAATCTCCATCAAACATTTATAGGCCAATAACAACAGGAGGAGATAAgaggaatttaaaaaataactttttttggaCCCCGATAGTCTGTAAAATCAAGCCTTTTGTTTCCCCctggaaaaaagaagaaatgagcAGGCCTTGACAGAAGCAGGCGAGgaaagacttgggacttgagaCGGGTTAAAAATCGTAATTGAGTGTTGCATGGTGGTGTACATCTCTCGTGacatttcttctttctttttaaagtagCCCTCACTACCTTACCTCTTACCACTTACCCCACCCGACCACCACCCCACCTCCCCATCTTTTTTAATGCATGAAAGTCATTCCTGAAATGTCCGCTCTTCTCTGAGAGTCCTTGAAGATGGGAAGCTCAGGTTCAAATCCGTTCCAAACCTCAACTCAACCCAGTACTCAACAGTATGTTATTCACAAACTTAGATAAAGCACAATGTCATTCAACATGACAATCAGTGTTGTGATTGGACCAGAACGTGTGGACAGATGATGGAAAGCTTTTGACGGACGATTTTTGTTCCCTTTCTTCAAGCCATAGAAGAAGCAGGTGACCGGAGAGGATTGGGAGTGTACTTTGGGTATTACGAGTTTTTTAGAATGCCATTTGGTATTTGCAATGCACCGGTGACTGGAGTTATATGGAGTAATCTGAAGATATATGGAGTTTTTGTGAGCTGCATACCAATTGGTTATACGTGTCTTGGTCTATGGGTCAGTTCAGTGCTCCCTGTACTATATTAGCAGGGCCACTGCTGACTTGAGGCCTGTCCTTGGATATCCAGTGTAAATGTTGAGTGGAAATGTTGAAAAGAATAACCAGTGTGTCTGTCGATATGTTCAATAGTTGGTCAATGAGGTGCAAGAGACAAAAGATGAAAGAcagatgctgatgctgatgatgtTGCCATGCCATGCCTGTCATGGTTATCATACCATGAACGTGGCTcaaatttttgcttttttttttttttgcttttctctttttgttaCTTTGTTATTTCATTTTCCCTGACAATAAAGAAAGAACATGGACGGgtagaaataaagaaatctaTTTAACAACAAAGACAAATGTGCAACATTCCTGGCTATAACaatgaacaaataaacaaacaaaccagtaaataaataaataaataatctctTCTTCGTTCTAGAAAACCAACCTTCATTCCTGCAGCAGCCCAACCCAAGAAAACCTTCAGCAGCCTGCCTCGCGTGTCGCAAGCAATCTCGCAAAAGATAGAAACCTTGTCTTTTTACTTTCTGTGAATCAAATCCCTGAACAAGTAATCTAGTCTGCAGGATGcactatcaaaaaaaaaaaaaccttccttTCCGTCCCTGttcgtatgtgtgtgttatcatGCTGTTCCATCATGTGGTTCCAGCCTTTGCTTCTATATTGTGTTTTGACGTAAGCGCTTTCTTTTCTAaacgacagaaaaaaaaaatatcctctGTGTTTTGAGCAGAGCAGTGTAGAGATTTTACTGCTGACAATAAATTCTTTTGTATGCTAATGCA

Function

GO: NA

KEGG:

id description
K01306 TRHDE; pyroglutamyl-peptidase II

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90376 lncRNA downstream 1661 26283426 ~ 26283640 (-) True G67023
TU90369 lncRNA downstream 12386 26271308 ~ 26272915 (-) True G67016
XR_002650160.1 lncRNA downstream 19330 26264958 ~ 26265971 (-) True LOC111192884
TU90346 lncRNA downstream 45229 26239387 ~ 26240072 (-) True G66997
TU90340 lncRNA downstream 74115 26210849 ~ 26211186 (-) True G66991
TU90417 lncRNA upstream 23944 26802324 ~ 26802946 (-) False G67061
TU90418 lncRNA upstream 23944 26802324 ~ 26803940 (-) True G67061
TU90420 lncRNA upstream 44396 26822776 ~ 26822992 (-) True G67062
TU90443 lncRNA upstream 282450 27060830 ~ 27061123 (-) True G67082
TU90481 lncRNA upstream 300880 27079260 ~ 27080989 (-) True G67114
XM_022671574.1 mRNA downstream 34354 26245760 ~ 26250947 (-) True LOC111193008
XM_007228549.3 mRNA downstream 754321 25516515 ~ 25530980 (-) True LOC103036580
XM_007228550.3 mRNA downstream 755140 25516515 ~ 25530161 (-) False LOC103036580
XM_007228553.2 mRNA downstream 787780 25475866 ~ 25497521 (-) True LOC103037725
XM_007228546.3 mRNA downstream 908146 25336717 ~ 25377155 (-) True snx33
XM_022671189.1 mRNA upstream 194264 26972644 ~ 27060138 (-) True cpm
XM_022671577.1 mRNA upstream 302958 27081338 ~ 27132749 (-) True LOC103028485
XM_022671585.1 mRNA upstream 398036 27176416 ~ 27386480 (-) False celf2
XM_022671593.1 mRNA upstream 398036 27176416 ~ 27300786 (-) False celf2
XM_022671591.1 mRNA upstream 398036 27176416 ~ 27300786 (-) False celf2
TU89906 other downstream 1623399 24660024 ~ 24661902 (-) True G66642
TU89874 other downstream 1777020 24507834 ~ 24508281 (-) True G66619
TU89155 other downstream 3993619 22290685 ~ 22291682 (-) True G66081
TU88823 other downstream 4600473 21629958 ~ 21684828 (-) True G65803
TU90658 other upstream 1342882 28121262 ~ 28132779 (-) False LOC103041081
TU90659 other upstream 1342882 28121262 ~ 28132779 (-) True LOC103041081
TU90660 other upstream 1342882 28121262 ~ 28132779 (-) False LOC103041081
TU90661 other upstream 1342882 28121262 ~ 28132779 (-) False LOC103041081
XR_002650206.1 other upstream 2664976 29443356 ~ 29467227 (-) False fuk

Expression Profile