RNA id: XM_022671648.1


Basic Information

Item Value
RNA id XM_022671648.1
length 2766
RNA type mRNA
GC content 0.48
exon number 10
gene id irf5
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 30337537 ~ 30371368 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atgggtagcataactcgacggAACACCGGTcagacagtcagtcagtcagtcaggcGGAGGGGCTCCTCTCTCTCAGTTCTTCTGAATGTGTGAAAAAGCGCGGAGACGCTGCTAAAGTGTGGAAACCTCGCCGCTATGTGTCTTTTCTGGATCAGGTAGGAGGAATTTACAGACTCACCTGCGGCTCCAtgtgtcctcctcctcctcctgctgcgtGTTTGTTTGTGGAGAATCTGCTGCTGAAGTTCGTCTGAGGAGTGTTCACCTCTCGCTGCTCAGGCTCTGTCACACCACTTTTCTAAAGCACCTAAAGGGAACCACCATGAGCATCCAGCCCCGGAGGATCCGCCTTAAGCCTTGGCTGCTGACCCAGGTGAACAGTGGGAAATACCCTGGCCTGCACTGGCTCAATAAGGAGCGGCGCTTGTTCCAGATCCCCTGGAGACATGCCACACGCCACCTACCTGCCCAGGAGGAAGAAAACACTATATTCAGGGCCTGGGCATTAGAGACAGGGAAGTATCAGGAGGGTGTGGACGAGCCAGATCCAGCTAAATGGAAGGCCAACCTCCGCTGTGCCCTCAACAAGAGCCGAGAATTCAACCTGAAATATGACGGCACCAAAGAAACCCCCATGCAGCCTTTCAAAATCTATGAGGTGTGCGATCAACCAGTCAATGGAGATGGAGGCGAGGATGATGAGGAAGAGcTGGCAAACTTCGAGCAACTATCCATCAATCCTCGAATTGGTGAACCTCCAAGCTACTCTGCATTCTCAGCAAACCCAGTGGATCCGTTCCTCCAACCTATCATACCTCCTGAGTTCTCCGGACACAGCCATATAGCTGCTACTGTAAAGCAGGAGGAATATATTCTTGGCGACGTTCTTCAAAATGGACTAGGGATGGGTCCTGGGGTCATGCCTCCACCTGTTGTCCCACATGCAGTCAATATTCCAGGGGCCGTGGTGGACAGTCCTATGCAGGAAGTGCACCCGCAAGCAGAGAGCCAGGTGCAGCCGTGTATCTCCGACCTGTTGAGCAGTCCTCATATGCTGCCTTTAACTGACCTGGACCTGAAGTTCCAGTACCGGGGCCGGTCAGTTGGTTCTCTGACGGTCAGCAATCCTCAGGGATGTCGGCTCTACTATGGTAATCTAGCTCCTACACCGGAGCAGGTGGAGCTGTTTGGGCCAGTCACTCTGCATCAGGTGCTTTTTCCCGGAACCGCTGATATCCAGAACGAGAAGCAGAGGTTCTATACAGAGCACCTGCTGGATGTGATGGATAGGGGGCTGATCCTGGAGATCCGAGGGCAGGACATCTATGCTGTGCGTCTGTGTCAGTGTAAAGTGTTTTGGTCTGGGCCAGGGGTGCATGAGGAGGGCCCACCTAACCCCATGGAGAGGGAGCGCAAAATTAACGTGTTCAGCCTCAACAATTTCCTGCAGGGATTAATCTTGTACCAGAAAGGGGAGGCGCCCAGCCCTCCTCCCTTTGAAATTTACTTCTGCTTTGGGGAGGACTGGCCTGACCGTAAGCCTAAAGAGAAGAAGCTCATCGTTGTCCAGGTGGTGCCTGTGGTCGCAAGGATCCTCACAGAGATGTTCTCAGGCGAGCTCTCCTGGTCCACAGACAGCATCCGTCTGCAGATCTCCAACCCTGACCTGAAAGACCAGACTGTGGAGCAGTTTAAGGAGCTTCACAGACTCCTGCAGAATCAACACGCTCAGGGCACATGGCATCAAAACCTCCAGTAACTCAAGACTGATCACCCAGGTTCCCTTTAGCAACACCCTGAATCTATCAGCTGCTGCAGAAGGAATGtagctgttttttgtttgttgcaaATACAACATGATCGTGATCATGAACAGGCGCTCGTGTTCCTGTATGGTTTTAACTACATTTGGTTgctcaaatcacatttttttgttttgtttatcagAAGCTCCCATGGATGCTGTTCAAGGGAGTGAAATTAAAAAGGTTTTGGGCTGCTAATAGTCACAGCTGCATCAGGGTTTAGCCGCATTGTGTTAATACTGTGTCATCAGCACTCGGACTCAGACGTGCTTTTGCTCATTTGATTCTAGCTGGACAGCCATCAAGTCTTGTCTTTTATCACATTGAGGAATATGGGTAGGTGCTCACAGCAAATAAAAACCACTAACATTTCCATTCAGACTATCAGACCGACTGCTTTTCATACGTTTAAGTCTAAGTCTGGCCTCAATCAGTATAAAGCGGGACTCAAGTCTCCAACACTAGGGTTAATCTTTGTCTGGGAGCTTCATCAGTATATTGTGCATCACTGCCACTAACGTCTTGTCCATGCTCTTGCAAAAAAGCCCTTTGTTTTTACCCcaacataaaatgtatttgtatatgtcttttttttagcttaaattTGTTCTTTTAAACATTGTATTTCAATAAATACCGCAGCAGTATTTTAGGGTGCAGGCATCACTCGGTTGATGCTGATCTGTAATTCAGTTACTTCTTTGCTTTCCAGcgttaattgtttttaatttctttccCGCAGTAAatgttttgtcttttaaattTGAACTGAATGTACAGAGAAACATATCCTGAACATACACTATTACCACTTTTAAGCTCAGTGTCATGCAATATGTGGAAAGTAAGCCATATGTAATGTCAAATGATGGTAATATAACATAACATTCTTTTCATTAAATGTAGTATCATTTTTACTAACAGTTGACTGGGATTGTCATTAAAAGAAACAGataaaatg

Function

GO: NA

KEGG:

id description
K09446 IRF5; interferon regulatory factor 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91241 lncRNA downstream 9411 30317890 ~ 30328126 (-) True G67640
TU91223 lncRNA downstream 59949 30277163 ~ 30277588 (-) True G67629
TU91222 lncRNA downstream 100822 30233873 ~ 30236715 (-) True G67628
TU91150 lncRNA downstream 271843 30065359 ~ 30065694 (-) True G67575
TU91147 lncRNA downstream 297049 30040265 ~ 30040488 (-) True G67572
TU91283 lncRNA upstream 53216 30424584 ~ 30425454 (-) True G67672
TU91287 lncRNA upstream 56590 30427958 ~ 30428487 (-) True G67674
TU91289 lncRNA upstream 75372 30446740 ~ 30446942 (-) True G67675
TU91290 lncRNA upstream 76189 30447557 ~ 30468713 (-) True G67676
TU91295 lncRNA upstream 114284 30485652 ~ 30485914 (-) True G67679
XM_007245014.3 mRNA downstream 56140 30236929 ~ 30281397 (-) True LOC103043802
XM_007245015.3 mRNA downstream 56148 30236929 ~ 30281389 (-) False LOC103043802
XM_007245017.3 mRNA downstream 65029 30236929 ~ 30272508 (-) False LOC103043802
XM_007245016.3 mRNA downstream 65029 30236929 ~ 30272508 (-) False LOC103043802
XM_022671646.1 mRNA downstream 65155 30236929 ~ 30272382 (-) False LOC103043802
XM_022671647.1 mRNA upstream 5813 30377181 ~ 30406541 (-) False LOC103025989
XM_007245042.3 mRNA upstream 10354 30381722 ~ 30406547 (-) True LOC103025989
XM_022671649.1 mRNA upstream 55091 30426459 ~ 30473893 (-) True LOC103025686
XM_007245010.3 mRNA upstream 227000 30598368 ~ 30600653 (-) False atp6v1f
XM_007245009.3 mRNA upstream 235104 30606472 ~ 30611944 (-) True LOC103041847
XR_002650206.1 other downstream 870310 29443356 ~ 29467227 (-) False fuk
TU90658 other downstream 2204758 28121262 ~ 28132779 (-) False LOC103041081
TU91366 other upstream 227027 30598395 ~ 30600908 (-) True atp6v1f
TU91422 other upstream 431342 30802710 ~ 30805567 (-) True G67755
TU91536 other upstream 604509 30975877 ~ 30992883 (-) True G67830
TU91559 other upstream 709426 31080794 ~ 31091017 (-) False tmem60
TU91562 other upstream 709426 31080794 ~ 31091017 (-) False tmem60

Expression Profile