RNA id: XM_022671649.1


Basic Information

Item Value
RNA id XM_022671649.1
length 2613
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC103025686
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 30426459 ~ 30473893 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tTGCATCCAgctggagagaggaggaggtggagaacGCACACTGCTCTCCTCAGAGCGCATAATGAACCCAGGATGACAGAGAGGAGAGGCGGCACCAGAACCCCCAGGAAACTTTCTTTCGTACcagtgtgagaaaaagagagagagagcgcatcaGGTAGAGGAGGGGACAGCAGAGCAGCAGGGCTGAGAGAGGAGAGTCCAGTGTTCAGATAAGAGTTCACaacagcaggagcagcagaagGACAAGCTGCTTTGACCTCCAGGCTACAGCGCTTGTGCTGAGCAGGAAAACTCGCTGAAAAATggatttctgaggattttctgcGATGCTGCTCTTCAGCCTTCCAGTTTTATACTGTGTGGTGCGTGTGCCTCCGAAGGTGAGGTGTGAGCCGCTGACGACACGTCCCAGATGTTTGACGCACTGAACCGGAACACCAGCTCTGCGTGTGCTGACGTCTTTAACCACGCTGCAACCAAAGCAGCCATCTATGGGACTTTCTCAAGATGTTGACTACAGGCCGGCGTCCGAACCTGGGGGCACCATGGCCAGTAATGTGACGTACAGTGAAGGGCCAGACGAGGCCCAGGAACAGTACAACTACCTGGCGTTGGTGTGTGGCGTGCCCCTCATCCTCATCATAATCCTGGGCAACGTCCTGGTGTGCCTCAGCGTACTGACCGAGAGGTCCCTCAAGACCGCCACCAACTATTTCATCGTGAGCCTGGCTGTGGCAGACCTGCTGCTGGCAGTTCTAGTCCTACCACTCTATGTGTATTCGGAGtttCTTGGAGGAAAGTGGACTCTGAGCATGTATATTTGTGATGCTTTGATGACCATGGACGTGATGCTCTGCACTGCTTCCATCCTCAATCTGTGCGCCATCAGCGTCGACCGGTACATTGCAGTGGTGGTTCCTCTGAAATACAACCGGAACCAGTTCAGCGTTCGTCAGCTGGCCCTGATTACAGCCACGTGGGTGCTGTCCCTGGGTGTGGCCAGTCCCGTGATATTTGGCCTGAACCAGGTGCCGAACAGGAACACGCACGTGTGCAAGCTGGAAGACAACAACTTTGTGATCTACTCGTCTGTGTGCTCGTTCTTTGTACCCTGCCCTGTGATGCTCCTGCTGTACTACTGGATGTTCAGGGGCCTGAAGCGCTGGAGCTCGGGACGTAGCCGCTCGCGCCTCAACCGGCCCTCGGGGGGGCGCCACAGCCTGTCCCTGCGGCTGGGGGCGGCACTGCAGAGGGAGAAGGGCAGGGCCAGGGAGAAGGTGGTGTACCTTATGCCGGAGGGCCTTAGCCCCACCTCGCTCTCTGCCACTCCCGCTAGTCCACTGTCACCTACCAGCCCTGTTACCCTGAGCACAGACGAGCAACCGGAGGGGCAGAGCCCGATGGCCGACACCGACCCCATGACCACGCAGATGGACAGCGTTTCGGACGCAGAGAACGTGGAGAAAGCCACTGAGGATGGAAGCTTGAGAGAGAACGGCTTGGAGAAGAACCACGGGTCCCACAGAGTGAGGAGGCACAGCAAGAGCAGCAGAGTGAGCGGACGAGAACGCAAAGCCATGAAGGTGTTGCCTGTCGTAGTAGgTGTGTTCCTGGCCTGCTGGACTCCCTTCTTTGTAGTTCATGTGACCAAAGCACTCTGCGAGTCATGTGACATCGGACCAACGCTGATCAGTGTGGTCACGTGGCTTGGTTATGTCAACAGCGCTGTTAACCCCATCATTTACACAGCCTTCAACGCTGAATTCAGGAACGTCTTTCACAAACTCCTGTGCTGTCGATCAGGAGACTGAGCCTTTTTAGGAGACTCCCGTGCAAGGGTCCTTTACCGAGGCTGAATGGCCACGAGACTTGTGGGAAAAGCCTTGGTGTTGTACACCAGTTCAGCCCTGGTAATGAAGAGATGCTGTACGTTGGAAAATGGAACCTTTAACTCTCAGAATAGACAGTTAAACTGACAAGATCAgtctgtttcagaaaaaaaatgagtgtaTGATAAAGACATTCTACAGAGGCCTTAGTTGACAAAACGGATAAGACTTTTGTCTTGTAAAATTGTTGCTTATCCACAATAGATTACTGCGTACTGTTGATATCATAGCCCAGAGGcataaaatatgtgaaaatgtGCACATTTGAAATGACAGTCGTTAGTGTTCAGTATGTGATTGTTATCAGTGTTGATCTCATGATGTTCAAAATGGTCAGATGTTCTTTATTTGCTTTCTTGCATATAGACAGTTTGAATGAAGATGATGcgagtaatttaaaaaaacagttacagtGAAGGCAGAATTGTGGTCCTCACAAACACCTGATTCACATTATTACTGTACATGCCTCACCAATAAGAGTGAGTTTAACAACACTTTATTTGAAGGGTATCCACATAACACTTCATAAAGCATTCATAAGCattgaataatgtatttataagcAATTTTTAGATATTTATGAACAGCTTATTCCAATATTCGCTACATGACTTAAGACTTGATTAAGCATGTCGTGATATAACATGCATGAGTGttgcatattatttttttaatttaatggatATGGTTGATAAGAGgaaaaacagatatttaaagg

Function

GO:

id name namespace
GO:0007195 adenylate cyclase-inhibiting dopamine receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004952 dopamine neurotransmitter receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91283 lncRNA downstream 1005 30424584 ~ 30425454 (-) True G67672
TU91241 lncRNA downstream 98333 30317890 ~ 30328126 (-) True G67640
TU91223 lncRNA downstream 148871 30277163 ~ 30277588 (-) True G67629
TU91222 lncRNA downstream 189744 30233873 ~ 30236715 (-) True G67628
TU91150 lncRNA downstream 360765 30065359 ~ 30065694 (-) True G67575
TU91295 lncRNA upstream 11759 30485652 ~ 30485914 (-) True G67679
TU91302 lncRNA upstream 23828 30497721 ~ 30498247 (-) True G67682
TU91305 lncRNA upstream 43429 30517322 ~ 30523797 (-) False G67683
TU91306 lncRNA upstream 43429 30517322 ~ 30525094 (-) True G67683
TU91414 lncRNA upstream 285006 30758899 ~ 30759762 (-) False LOC111192887
XM_007245042.3 mRNA downstream 19912 30381722 ~ 30406547 (-) True LOC103025989
XM_022671647.1 mRNA downstream 19918 30377181 ~ 30406541 (-) False LOC103025989
XM_022671648.1 mRNA downstream 55091 30337537 ~ 30371368 (-) True irf5
XM_007245015.3 mRNA downstream 145070 30236929 ~ 30281389 (-) False LOC103043802
XM_007245010.3 mRNA upstream 124475 30598368 ~ 30600653 (-) False atp6v1f
XM_007245009.3 mRNA upstream 132579 30606472 ~ 30611944 (-) True LOC103041847
XM_022671651.1 mRNA upstream 150731 30624624 ~ 30642727 (-) False dennd6b
XM_007245007.3 mRNA upstream 150731 30624624 ~ 30642223 (-) True dennd6b
XM_007245004.3 mRNA upstream 197441 30671334 ~ 30679232 (-) True fam3c
XR_002650206.1 other downstream 959232 29443356 ~ 29467227 (-) False fuk
TU90658 other downstream 2293680 28121262 ~ 28132779 (-) False LOC103041081
TU91366 other upstream 124502 30598395 ~ 30600908 (-) True atp6v1f
TU91422 other upstream 328817 30802710 ~ 30805567 (-) True G67755
TU91536 other upstream 501984 30975877 ~ 30992883 (-) True G67830
TU91559 other upstream 606901 31080794 ~ 31091017 (-) False tmem60
TU91562 other upstream 606901 31080794 ~ 31091017 (-) False tmem60

Expression Profile