RNA id: XR_002650147.1


Basic Information

Item Value
RNA id XR_002650147.1
length 232
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC111192864
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 3712242 ~ 3713423 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAGGCATTCCCTGTTGAAGCTATTGAGACCAAAATCTGTATCTACTTTGCTCTATATGCTTTTTATATAGTGAACTTGACTGAGAGAGCCTGCAGAGAACTTGACTGAGAGAGGCATTCCCTGTTGAAGCTATTGAGACCAAAATCTGTATCTACTTTGCTCTATATGCTTTTTATATAGTGAACTTGACTGAGAGAGCCTGCAGAGAACTTGACTGAGAGAGCCTGCAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83212 lncRNA upstream 14461 3695234 ~ 3697781 (+) True G61657
TU83113 lncRNA upstream 314470 3396719 ~ 3397772 (+) False G61607
TU83115 lncRNA upstream 314470 3397028 ~ 3397772 (+) False G61607
TU83118 lncRNA upstream 314470 3397028 ~ 3397772 (+) False G61607
TU83122 lncRNA upstream 316207 3394779 ~ 3396035 (+) True G61608
XR_002650148.1 lncRNA downstream 134 3713557 ~ 3714248 (+) True LOC111192865
XR_452999.3 lncRNA downstream 297961 4011384 ~ 4044308 (+) True LOC103028258
TU83399 lncRNA downstream 343016 4056439 ~ 4056959 (+) True G61804
TU83415 lncRNA downstream 409259 4122682 ~ 4122963 (+) True G61815
TU83385 lncRNA downstream 416894 4130317 ~ 4131090 (+) True G61790
XM_007232278.3 mRNA upstream 17318 3656162 ~ 3694924 (+) True cfap54
XM_022671240.1 mRNA upstream 60591 3645317 ~ 3651651 (+) True mcat
XM_007232281.3 mRNA upstream 62177 3645317 ~ 3650065 (+) False mcat
XM_007232291.3 mRNA upstream 69819 3562745 ~ 3642423 (+) True rap1b
XM_015602283.2 mRNA upstream 338491 3361826 ~ 3373751 (+) False dyrk2
XM_022671242.1 mRNA downstream 133620 3847043 ~ 3853727 (+) True LOC103031106
XM_015601030.2 mRNA downstream 133629 3847052 ~ 3853727 (+) False LOC103031106
XM_022671244.1 mRNA downstream 224068 3937491 ~ 3949734 (+) True LOC103029111
XM_007232269.3 mRNA downstream 243239 3956662 ~ 3968956 (+) True atxn10
XM_007232266.3 mRNA downstream 334819 4048242 ~ 4074563 (+) True LOC103027723
TU83070 other upstream 408244 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 408244 3299089 ~ 3303998 (+) False G61575
TU82609 other upstream 1776743 1921395 ~ 1935499 (+) True LOC103036328
trnay-gua_8 other upstream 1890466 1821689 ~ 1821776 (+) True trnay-gua_8
trnay-gua_7 other upstream 1890907 1821248 ~ 1821335 (+) True trnay-gua_7
TU83815 other downstream 2032781 5746204 ~ 5754284 (+) True LOC111192936
TU83965 other downstream 2268950 5982373 ~ 5993994 (+) True c7h12orf75
TU84211 other downstream 3137807 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 4819336 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 4819925 8533348 ~ 8540123 (+) True LOC103041471

Expression Profile