RNA id: XR_002650153.1


Basic Information

Item Value
RNA id XR_002650153.1
length 882
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id LOC111192872
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 10346960 ~ 10353740 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAGGTTTTGTGACTCAACACCGTAACACAGTGTAACAGCGTGTTCCTGCTGTACGAGGAAGAACCGGGCTGACCGCAGCTGCTGCCGTTCGGCAGTCACCATGATGAAAGCGAACTGACGACACATTGTGCGCTGGTGGAGTTTCGCCAGAGGAAGGCATTGTTTCCTGATGTTCTGACCCGAGTGTAGGGTTTCAGCATGACCTTCTCgTTCAGGAAGTGCCGATCGCTgatttggcatgtctgtgtgtggagAGCCAAACcacaaaataagaataaaagaagaagaagaaaaagtgcaTAGGAAGCAGAAGGGAAAGCAGGGCCAGTGTGTGTTGAATAAGTAGCGGATGGGAGTCTCAGTGTAAAGAGCCTTGCGGATAATCCAGCCAGCTTTGGGGTTCACTGGGAGGCCAGTGCGTGAATCTGGGTCATTCCGGAGTATTAGGAGCAGCGAAACGCTCATGCAGACTCAGCATGAGACCCCATCCCACAATCCAGTACAAATGGTCAGAGGGTGTAGATACACTGCACTGAACTACTACACTCTCCAGCTAATATTTACACAAACAGCTTAACATTTAACATCAATGACTGGACCAAACATTccaattttcatttaaaatcattCCAAACTGCAATAAAATCTGTATACAGTAACATATATCATATGTCAAAACTTcatgtaaactgtaaaaatcCATGTAAAACATTAATTCTACTATAAATTTACTATAGatgtaaataagttaaaatCTTTTGAACAAAATGAACTGCAGAATTTCTGTATACCTTAAATCATCATTAAGTACACCTTAGTCACCTAAGAATGATGAACAGTGacctgtttctttgcattttgcaataaatacatttttgtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85267 lncRNA upstream 98929 10247707 ~ 10248031 (+) True G63199
TU85262 lncRNA upstream 127065 10219559 ~ 10219895 (+) True G63194
TU85261 lncRNA upstream 128020 10218674 ~ 10218940 (+) True G63193
TU85151 lncRNA upstream 268964 10077679 ~ 10077996 (+) True G63103
TU85149 lncRNA upstream 273561 10073114 ~ 10073399 (+) True G63101
TU85330 lncRNA downstream 195607 10549347 ~ 10549622 (+) True G63244
TU85332 lncRNA downstream 210956 10564696 ~ 10565793 (+) True G63246
TU85343 lncRNA downstream 276388 10630128 ~ 10630473 (+) True G63254
TU85349 lncRNA downstream 1276902 11630642 ~ 11635507 (+) False G63260
TU85350 lncRNA downstream 1276902 11630642 ~ 11635507 (+) True G63260
XM_015601062.2 mRNA upstream 30539 10310441 ~ 10316421 (+) True pim3
XM_022671324.1 mRNA upstream 276078 10042203 ~ 10070882 (+) True il17rel
XM_007237088.3 mRNA upstream 379669 9929528 ~ 9967291 (+) False usp15
XM_007232396.2 mRNA downstream 55281 10409021 ~ 10420809 (+) True alg12
XM_022671327.1 mRNA downstream 86274 10440014 ~ 10464718 (+) True brd1
XM_022671328.1 mRNA downstream 86274 10440014 ~ 10464718 (+) False brd1
XM_022671330.1 mRNA downstream 86274 10440014 ~ 10462751 (+) False brd1
XM_022671331.1 mRNA downstream 86274 10440014 ~ 10457583 (+) False brd1
TU85065 other upstream 696873 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 906396 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 1806837 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 1813728 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 3491198 6851230 ~ 6855762 (+) True G62455
TU85565 other downstream 2114310 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 2305708 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 2802486 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 4390995 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 6068494 16422234 ~ 16426613 (+) False arid2

Expression Profile