RNA id: XR_002650155.1


Basic Information

Item Value
RNA id XR_002650155.1
length 383
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id LOC111192878
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 20957703 ~ 20958378 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGAGGTGGGTTAGAAACAAACCTGATTCCTCGAGGGTAGAAGTACGTGAGGAAGCTTACCTATGGAATATGGAAGAGCCTACTCTTAATTCAAAACCATCTAGAACTAGAAGTAagGTGTCTGATTCTGAGAGGGGTGCATGCTGTGCTGTAGTAAGTGTTGGTGAACACAAACCATTGACTTTGGATGACGTCATGCAGGTTGTTACTGAGCAGGGAAAGCAGCTTAGTGAGCTAACGCAGGCAGTAATGGAGTTGACCACTCAGAAAACTCACACGTTCAAACCCGTCTCTAAGGCAAGGGCTCCACTCAGATTTACAGATGATGGCAAACCTATCTGTCTGAAGTGTCAGAAGGAGGGACACATTGCCAGAAATTGTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88510 lncRNA upstream 624 20956851 ~ 20957079 (+) True G65564
XR_002650198.1 lncRNA upstream 122850 20832020 ~ 20834853 (+) True LOC111192987
TU88410 lncRNA upstream 207622 20744976 ~ 20750081 (+) True G65494
TU88398 lncRNA upstream 388598 20567363 ~ 20569105 (+) True G65482
TU88386 lncRNA upstream 403331 20552464 ~ 20554372 (+) False G65476
TU88526 lncRNA downstream 67424 21025802 ~ 21026070 (+) True G65576
TU88539 lncRNA downstream 257557 21215935 ~ 21217263 (+) True G65585
TU88590 lncRNA downstream 400992 21359370 ~ 21359667 (+) True G65626
TU88597 lncRNA downstream 412672 21371050 ~ 21372121 (+) True G65630
TU88601 lncRNA downstream 418868 21377246 ~ 21377776 (+) True G65633
XM_022671495.1 mRNA upstream 362402 20593666 ~ 20595301 (+) True LOC111192985
XM_022671492.1 mRNA upstream 460042 20417512 ~ 20497661 (+) True pawr
XM_022671489.1 mRNA upstream 559736 20299704 ~ 20397967 (+) False ppp1r12a
XM_022671484.1 mRNA upstream 559800 20299703 ~ 20397903 (+) True ppp1r12a
XM_022671510.1 mRNA downstream 452471 21410849 ~ 21438210 (+) True tmem214
XM_022671511.1 mRNA downstream 452471 21410849 ~ 21438210 (+) False tmem214
XM_022671504.1 mRNA downstream 482031 21440409 ~ 21547440 (+) False agbl5
XM_022671508.1 mRNA downstream 482031 21440409 ~ 21547440 (+) False agbl5
XM_022671506.1 mRNA downstream 482056 21440434 ~ 21547440 (+) False agbl5
TU88511 other upstream 68 20957135 ~ 20957635 (+) True G65565
XR_002650196.1 other upstream 1163424 19780663 ~ 19794279 (+) False LOC103037311
TU87956 other upstream 1616824 19280300 ~ 19340879 (+) True alyref
TU87957 other upstream 1678888 19276802 ~ 19278815 (+) False LOC103044219
TU87714 other upstream 2334204 18619860 ~ 18623499 (+) True G64990
TU88525 other downstream 65797 21024175 ~ 21024574 (+) True G65575
TU88777 other downstream 671484 21629862 ~ 21684834 (+) False gen1
TU89211 other downstream 1981224 22939602 ~ 22949192 (+) False ccdc167
TU89229 other downstream 2040992 22999370 ~ 23003421 (+) True c7h11orf98
TU89299 other downstream 2172716 23131094 ~ 23137954 (+) False crebl2

Expression Profile