RNA id: XR_002650176.1


Basic Information

Item Value
RNA id XR_002650176.1
length 270
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id LOC111192927
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 914900 ~ 916812 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAGGTGAGGTGGAAAAAGAGAACACAACGGAGGACTATGATGATGCCATCCCTGCTTTACAGACACCTGACAGATTATCaaaagaCAATGTGGAGATGTATGATGATGCTATACCTGCTGGAGAGAACCCAAACATTACAACAGTGTGCACTCCAGAGGGCTATGATGATGTCGCTTCTGGGCAGGATGTAGGAGGTGTAGCAGGTGATGGAGACTATGGAGACATTGTGGAGGTGGTAAAGGAGCCTGAGGCAAATGGATAGATCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82279 lncRNA upstream 52658 853526 ~ 862242 (+) False G61013
XR_002650177.1 lncRNA upstream 56391 853711 ~ 858509 (+) True LOC111192928
XR_002650171.1 lncRNA upstream 68387 845633 ~ 846513 (+) False LOC103039262
TU82328 lncRNA upstream 79627 833987 ~ 835273 (+) True G61016
TU82293 lncRNA upstream 104928 807397 ~ 809972 (+) False G61014
TU82295 lncRNA downstream 74001 990813 ~ 1049056 (+) False G61014
TU82312 lncRNA downstream 74001 990813 ~ 1047326 (+) False G61014
XR_002650172.1 lncRNA downstream 130985 1047797 ~ 1049056 (+) True LOC111192923
XR_002650146.1 lncRNA downstream 133318 1050130 ~ 1051090 (+) True LOC111192863
TU82422 lncRNA downstream 561345 1478157 ~ 1480898 (+) False LOC103024246
XM_022671160.1 mRNA upstream 595 912891 ~ 914305 (+) True LOC111192896
XM_022671159.1 mRNA upstream 2588 893369 ~ 912312 (+) True LOC111192895
XM_022671158.1 mRNA upstream 104903 809234 ~ 809997 (+) True LOC111192892
XM_015603384.2 mRNA upstream 134103 749881 ~ 780797 (+) True syt10
XM_022671162.1 mRNA downstream 2362 919174 ~ 927544 (+) True LOC111192897
XM_022671163.1 mRNA downstream 12798 929610 ~ 943921 (+) True LOC111192898
XM_022671164.1 mRNA downstream 84075 1000887 ~ 1007827 (+) True LOC111192900
XM_022671165.1 mRNA downstream 480386 1397198 ~ 1404499 (+) True cracr2a
XM_022671207.1 mRNA downstream 528823 1445635 ~ 1477258 (+) False LOC103024246
XR_002650173.1 other upstream 70210 841037 ~ 844690 (+) True LOC111192924
TU82226 other upstream 289891 599683 ~ 625009 (+) False LOC103045537
XR_001518568.2 other upstream 313751 599659 ~ 601149 (+) True LOC103045537
TU82081 other upstream 768217 144246 ~ 146683 (+) False mrps33
TU82298 other downstream 70946 987758 ~ 1013716 (+) False G61014
TU82286 other downstream 71484 988296 ~ 1014461 (+) False G61014
TU82277 other downstream 110985 1027797 ~ 1043316 (+) True G61013
TU82516 other downstream 873687 1790499 ~ 1808930 (+) False LOC103031096
TU82507 other downstream 874740 1791552 ~ 1807151 (+) False LOC103031096

Expression Profile