RNA id: XR_002650192.1


Basic Information

Item Value
RNA id XR_002650192.1
length 1311
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC111192959
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 15890422 ~ 15907327 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGAGGATGGAACGCTTATTATCTCCTTGAAGGATGAAGACTCAGTACTCTCCTCCTGGACCCTGCCTTAATACATGAGAAATTTCCTGTTTGGGTGCCAGTTGGAACGCTCCAGCCCGGATGGCAAGTCTTTGGGCTGGTGAAACACGAAGCACACTGGAGCAGCCACATGAAAGAGTCTGCAGGCCGCTGAAAGGACATAAGAGAGCAAATGTGTCCACTTTGATCAGCGGACATCTGTCTCTCCTCTCAACGTGTGATCACTCTTCCGTCTACATTGTCTCTGGCCCTCTTCAGACCCTTCCATCTGGACTTCAGAGGAGCTCTGTGTGAATCAGAGGGCCGGCTCTCGTGTCGGTGCTGTTGTGAAGTCTCTGCGTTTGAGGTTGCTTGCTCGGTTGAGTTCACAAGACGGTGGAGCACTTTTCATTTTGGAACACCTGGTGCTGGTAATCAGCGTAAAACACAAAAAGTACATCATAACTATGTGTTCTTTTGTTCTTGATAGCCAGCTTCTGTTGTTAAACTGAGCTCAGTCCTCATTTAATGATGTGTGCAGCTTTATTTCCCCCACACAAGCCAACGTTTCCAGCTGATGTCACACCACAGATGACGTGCTGGAAGTCCTGCTGGCTAAGCTTGCCCTTAAGAGGacgaagagagaaagagatagcgAGAAAGTGATGATTTTATAGATGAAGAATGCTGTCTATAATGTGGAGAGCATGTGGGGAGATGTCAGTATCAAACACTGTCCACATTACCGAGCCTCGTCAGTCTGGATGCTGttccttttcttttcaaaatgctgtttaaagcagcagccAGATTGTGCGTGTGGTGAGATGGGGTGCTCTTCTCCGTACATCTGTTCTCACTCTTTCCTGGCCAGAGATAAGTTGCATGAAGCAGTAGAAGCAGGAACACCATTACACTCTGGCTGTGCAGATAAACGGCCTGTCCGTCTGAGTCTGAACTGAACCAGTGGACCTTTTGAGGGCTACACTATATTTAGAGGTGGAATCAGTCTGGGAGGTTCTGCCGTCAGATAGCAAAGGGTGCGCTGTCTTTTACCCAGACTGACGTCAGCGGTGGGGGAGAATGCTGAATGTCACATGCACTCTTGATCTCAGAATGCTTTTGTTTCAGTTTGACAGGTGAAGCTATACTTAAAAGTCAATGTCGTTTTTGCTGAGGCTGATCTATGTCAGATGAATAAAAACAGGGCAGAAGGGGATTGGTTCTTTACACAACCACTGCTTTAATGCAatgaaaaatgtacaaaattcttaataattaaaattaattatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86603 lncRNA downstream 72566 15778116 ~ 15817856 (-) False LOC103027187
TU86593 lncRNA downstream 222395 15665176 ~ 15668027 (-) True G64156
TU86502 lncRNA downstream 830779 15058374 ~ 15059643 (-) True G64085
TU86477 lncRNA downstream 886545 15003669 ~ 15003877 (-) True G64064
TU86476 lncRNA downstream 890397 14999809 ~ 15000025 (-) True G64063
TU86668 lncRNA upstream 53611 15960938 ~ 15961286 (-) True G64214
TU86715 lncRNA upstream 193096 16100423 ~ 16105219 (-) True G64247
TU86744 lncRNA upstream 233329 16140656 ~ 16141428 (-) True G64273
TU86751 lncRNA upstream 259736 16167063 ~ 16167373 (-) True G64280
TU86793 lncRNA upstream 269186 16176513 ~ 16180454 (-) True G64313
XM_022671393.1 mRNA downstream 22627 15671306 ~ 15867795 (-) True LOC103027187
XM_022671392.1 mRNA downstream 266074 15578874 ~ 15624348 (-) False LOC103045938
XM_007245021.3 mRNA downstream 266074 15578874 ~ 15624348 (-) True LOC103045938
XM_022671391.1 mRNA downstream 335790 15270863 ~ 15554632 (-) True snd1
XM_022671174.1 mRNA downstream 897692 14990346 ~ 14992730 (-) True LOC111192906
XM_015604747.2 mRNA upstream 18219 15925546 ~ 15927271 (-) True akap14
XM_022671401.1 mRNA upstream 440232 16347559 ~ 16351713 (-) True LOC111192960
XM_022671400.1 mRNA upstream 440232 16347559 ~ 16351199 (-) False LOC111192960
XM_022671403.1 mRNA upstream 523973 16431300 ~ 16450766 (-) False scaf11
XM_015602654.2 mRNA upstream 523973 16431300 ~ 16450766 (-) False scaf11
TU86473 other downstream 895590 14994164 ~ 14994832 (-) True G64060
TU86395 other downstream 1104273 14785321 ~ 14786149 (-) True G64034
TU85708 other downstream 3524683 12320555 ~ 12365739 (-) True G63516
TU85294 other downstream 5479191 10314799 ~ 10411231 (-) False G63217
TU85152 other downstream 6267634 9618661 ~ 9622788 (-) True G63104
TU86884 other upstream 677738 16585065 ~ 16585647 (-) True G64387
TU87029 other upstream 975008 16882335 ~ 16887903 (-) False G64492
TU87032 other upstream 975008 16882335 ~ 16887903 (-) True G64492
TU87035 other upstream 975008 16882335 ~ 16887903 (-) False G64492
TU87037 other upstream 976004 16883331 ~ 16887903 (-) False G64492

Expression Profile