RNA id: XR_002650194.1


Basic Information

Item Value
RNA id XR_002650194.1
length 2192
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id LOC111192963
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17039842 ~ 17042071 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtctgaaacagatttaaaacagatacaaatcggATTACTTAAACTCTTCACTTGACGatgtggtctgagacgcatttaaaacagatataaatctgattatttaaaCTGTTCACTTCttgaggtggtctgagacagaTTTGGAATGGACCACTTTAGAAGATGGTCTGAGATGCCTGTAAAATAGATACAAATCAGATCAATTAAACCACTTtagaagatggtctgagacacattttgAAGTGATAAAAAtccgatcactcaaaccacttcaggaggtggtctgaggcgcctttaaaataaatctgatttctCAAACTATTCACTTCTGTAAGTGGTCTGATACAGATTTGGAATggaccacttcaggaggtggtctgagacgcatttaataGAGACATAAATCAGATATCTTAAACTTTTAACTTCACAATGTGGTCttagatgcatttaaaacagatacaaatcggATTACTCAAACTATTcgcttcaggaggtggtctgataCAGATTTGGAAAGGACCACTTCAGatggtggtctgagacacatttaatacagatacaaatctgattactgaaacTGTTCACATGctggaggtggtctgagacagaTTTGGAATTGACCACTCCAGGAGTTGGTCTGAGACAGATTTAATAGAGATATAAATCTGATTACTTAAACTCTTAACTTTACAATGTGGTCttagatgcatttaaaacagatataaatctGATTACTCAAACTATTCACTTCTGGAGATGGTCTGAGAAAGATTTGGAACGGACCACTTCCAAATGGTGGTCTGAGACAGATTTGTAATGGATCAATTCAGGATGTGGTGCGAGACACTTTTAATACAGATATAAATCTGATTACTCAAACTAttcacttcaggaggtggtctgagatagATTTGGAATGGACCActttaggaggtggtctgaggcACCTTTAAaatagatacaaatctgattactcaaaCTATTCACTTCTGTAAGTGGTCTGATACAGATTTGGAATggaccacttcaggaggtggtctgagacagaTTTAATAGAGATATAAATCTGATTACTTAAACTCTTAACTTTACAATGTGGTCttagatgcatttaaaacagatacaaatctgattactcaaaCTATTcgcttcaggaggtggtctgataCAGATTTGGAATGGACCActttaggaggtggtctgaTACAGATTTGGAAAGGACCACTTCAGatggtggtctgagacacatttaatacagatacaaatctgattactgaaacTGTTCACATGctggaggtggtctgagatagATTTGGAATGGACCActttaggaggtggtctgaggcACCTTTAAaatagatacaaatctgattactcaaaCTATTCACTTCTGAGACAGAAGTGGAAGTGGTCTGACAcagattttaaatttaaaacagattgaaatctgattatttaaaCTGTTCGCTTCtagaggtggtctgagacagaTTTGGAATAGACCACTTCAgtaggtggtctgagacgcatttaataCAGATACTAATCTGATTACTTAAACCACTGTTGCGTATTTCATCCAGCTCAATAATTAGATTTCTGAAGACGCATTTATTCACCAGATATAAATGTAAACGTGTAAATGGGGATACAATCCAAATACTGATCACATGAAGTCAgatgaccaggtgtaaacgggGTCTTATTGGAACTCAGTAGAAAGATTGTGTTTCCTGTGTTTCTGTATGAATATAAATGAATCTGAATGAGCAGAAGTGGTCTGAGTCCAGTATCTGAAGTTGTGTCCTCAGTGAGACGAGGACGCGTGTCCTCCTGGAGCTGGGAGCTGGTGGACCGGGCGTAGTTATGCATTGGCGTcagcagagtttagtgttttagaCTGCAGTACCTGTGCCTACATGGATACCATGCCGTGTGCTGCCCTGCTTCAGGGTGTAATATTCCCTTGCTTTTCTAAAGGGGTTTAAtgtttcaaagatttttttaatgctttggaTATCTTGTAATCATGATATTCTGGGTTTTTTtccaaggcttttttttttcagttccacttaaatgtaaattatgcaTTATATAGAGCATCATTTTAAAGATGACTTGGTactttaattattgtaattatgaAGAGATGTAgcctttattaaaatgtttatatttttcaaatGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87055 lncRNA downstream 86972 16952588 ~ 16952870 (-) True G64510
TU87053 lncRNA downstream 91054 16948589 ~ 16948788 (-) True G64508
TU87050 lncRNA downstream 133821 16905403 ~ 16906021 (-) True G64505
TU87019 lncRNA downstream 149059 16889102 ~ 16890783 (-) False G64485
TU87034 lncRNA downstream 151939 16882335 ~ 16887903 (-) False G64492
TU87206 lncRNA upstream 103207 17145278 ~ 17145667 (-) True G64619
TU87209 lncRNA upstream 113535 17155606 ~ 17156047 (-) True G64622
TU87219 lncRNA upstream 130578 17172649 ~ 17173562 (-) True G64632
TU87293 lncRNA upstream 536726 17578797 ~ 17581592 (-) False G64682
TU87295 lncRNA upstream 537095 17579166 ~ 17581592 (-) False G64682
XM_022671410.1 mRNA downstream 94177 16895580 ~ 16945665 (-) True LOC103039070
XM_022671411.1 mRNA downstream 94397 16895580 ~ 16945445 (-) False LOC103039070
XM_022671153.1 mRNA downstream 332767 16696081 ~ 16707075 (-) True LOC111192875
XM_007237943.3 mRNA downstream 379335 16654113 ~ 16660507 (-) True LOC103027149
XM_022671404.1 mRNA downstream 477100 16529205 ~ 16562742 (-) False LOC103027662
XM_022671416.1 mRNA upstream 3443 17045514 ~ 17079220 (-) False LOC103042974
XM_022671415.1 mRNA upstream 4292 17046363 ~ 17096825 (-) False LOC103042974
XM_022671413.1 mRNA upstream 4292 17046363 ~ 17084481 (-) False LOC103042974
XM_022671414.1 mRNA upstream 4292 17046363 ~ 17084481 (-) True LOC103042974
XM_022671176.1 mRNA upstream 61224 17103295 ~ 17307076 (-) True cep112
TU87029 other downstream 151939 16882335 ~ 16887903 (-) False G64492
TU87032 other downstream 151939 16882335 ~ 16887903 (-) True G64492
TU87035 other downstream 151939 16882335 ~ 16887903 (-) False G64492
TU87037 other downstream 151939 16883331 ~ 16887903 (-) False G64492
TU86884 other downstream 454195 16585065 ~ 16585647 (-) True G64387
TU87262 other upstream 493225 17535296 ~ 17597545 (-) False LOC111192911
TU87264 other upstream 544774 17586845 ~ 17597545 (-) False LOC111192911
TU87266 other upstream 544774 17586845 ~ 17597545 (-) False LOC111192911
TU87272 other upstream 544774 17586845 ~ 17597545 (-) True LOC111192911
TU87274 other upstream 544774 17586845 ~ 17597545 (-) False LOC111192911

Expression Profile