RNA id: XR_002650195.1


Basic Information

Item Value
RNA id XR_002650195.1
length 1557
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id LOC111192982
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19250226 ~ 19252449 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGAGAGGTAGAGAATAATGGAGAAGTATAGATAATGGAGAGGTAGAAATAATGGAGAAGTATAGATAATGGAGAGATATAGATAATGGAGAAACAGGATTTAAATCAGATTatcctttaaaatatataatttatatatgacTAATATAATCTGCTGAAACCTCAACAGTTTACAGTTTTGGGCTcaataatgcagaaaaataaTTGAAGGGTTTTGGATTCTCCATTACTGTCACAATATTGTTACCATTCCTCTGCTGGCAGGATAACCAGCAAGCTGGTTGGGTATTTTTGTTAAGGGGCGGGGCTTTATTTATAGCACATTCTTCAGGATTACACACATTCAGTACAGAGCGGATTATATAGAAACTGATTCTGGCCGGAATGTGAATTATCATAAGTTGGAAAAGGGCCTGATGATCATTATGTGTCTAGACAGATGGAACAGCCAGAACCCACCATCATTAGCCCACCCCCACTGCACTATCctctatcagccctcactacaactcccataattcacctcaccttaccatgagcacactgaccagtgttcaaccaacttcactcacaagataacacctcacaacgttTACAGTTACTGGTGTTCCCAACCATCCCCTGAAGTAACCTTTAGTAATTTTGTAACTTCTGGGTAATCtgtgtaattatgtaattagaAGCTGATCTGTGCTGCAGGATCTTCATTtgaatacaatataaatattatttgaaatgaataataatttttaaggaTGATAATTTAATCCCGTGCTGCAGAGCAGGGTAAAGAGCAGGGTGTTACTATAAgcatgtttttgttattatagTTGAGGCACCAGGTGTCCATTTCCTGTCCTATTGTGGGGGGGTGGCAGTGACTTCCTGTTTTTACGATTGGCACCAGAGCAGAAATCTCCTCCATTGTTTCTCTGAGAAAACTAACCTCCAGCTGCTGGTTCTCCGCTGATTAACGGCCGAGTTCTGCTAATGGTTCTGGAATGCAGGAGAAACAATCCTGCAGTCGAGCTGCAGGACAATAACAATATCCTGAACTGCAGGAAAACAGATCAGCACCATTAACACTCATTAGCCCAGCGCTAACATTCATTAGCCCAGCACTTACGGTCATTAGCCCAGAGCTAACGCTCATTAGCCCAGCGCTAACATTCATTAGCCCAGCGCTAACGCTCAtagcctctctctctgtttctgcagAAGATCCAGACCATCAAACCACAGACTCTGTGGAGTACGTCCAGCTCAACCACTGCAATCAGAACCCCGAGTAAACCCGGCCGCACCCTGGCTCCGCCCCCTTTAATTACACCGCTAATTTATTCTGCTTCTCCActggggaggggggaggggggcgcACGGCTGGACACGAGCCGGCGGACCTGTGggatatttgtgtgtatatgagttaaACAGTCGTGGTGTTGAGTTATGTGTTGAGTTATGGATGCTGTTATTGACATTGTGTTGAATTATAGATGTTGTGTTGGGTTATGGACAATGTGTGTAAAGCTGAGAATAAAGGTTCTGCTTTCAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87937 lncRNA upstream 65 19247531 ~ 19250161 (+) False G65145
TU87938 lncRNA upstream 65 19247531 ~ 19250161 (+) False G65145
TU87940 lncRNA upstream 65 19247531 ~ 19250161 (+) True G65145
TU87944 lncRNA upstream 25634 19224014 ~ 19224592 (+) False LOC103045528
TU87934 lncRNA upstream 87308 19162569 ~ 19162918 (+) True G65144
TU87954 lncRNA downstream 1034 19253483 ~ 19255516 (+) False G65150
TU87953 lncRNA downstream 1912 19254361 ~ 19257583 (+) True G65150
TU87995 lncRNA downstream 341462 19593911 ~ 19594223 (+) True G65178
TU87992 lncRNA downstream 348439 19600888 ~ 19601638 (+) True G65176
TU87999 lncRNA downstream 357016 19609465 ~ 19610521 (+) True G65182
XM_022671184.1 mRNA upstream 1074 19223209 ~ 19249152 (+) True LOC103045528
XM_022671183.1 mRNA upstream 71639 19177002 ~ 19178587 (+) True LOC111192912
XM_022671417.1 mRNA upstream 230958 18990517 ~ 19019268 (+) True LOC111192965
XM_022671430.1 mRNA upstream 543680 18687257 ~ 18706546 (+) True LOC103035713
XM_022671432.1 mRNA upstream 543680 18687263 ~ 18706546 (+) False LOC103035713
XM_022671456.1 mRNA downstream 15973 19268422 ~ 19271847 (+) True LOC103043906
XM_022671461.1 mRNA downstream 24555 19277004 ~ 19279517 (+) True LOC103044219
XM_007241718.3 mRNA downstream 27843 19280292 ~ 19284033 (+) False alyref
XM_022671459.1 mRNA downstream 34386 19286835 ~ 19305457 (+) True arhgdia
XM_022671460.1 mRNA downstream 34805 19287254 ~ 19305457 (+) False arhgdia
TU87714 other upstream 626727 18619860 ~ 18623499 (+) True G64990
TU87328 other upstream 1530798 17690209 ~ 17719428 (+) False G64698
TU86972 other upstream 2362031 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other upstream 2374285 16873087 ~ 16875941 (+) True G64449
TU86961 other upstream 2385772 16833296 ~ 16864454 (+) False LOC103030423
TU87957 other downstream 24353 19276802 ~ 19278815 (+) False LOC103044219
TU87956 other downstream 27851 19280300 ~ 19340879 (+) True alyref
XR_002650196.1 other downstream 528214 19780663 ~ 19794279 (+) False LOC103037311
TU88511 other downstream 1704686 20957135 ~ 20957635 (+) True G65565
TU88525 other downstream 1771726 21024175 ~ 21024574 (+) True G65575

Expression Profile