RNA id: XR_002650198.1


Basic Information

Item Value
RNA id XR_002650198.1
length 693
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC111192987
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 20832020 ~ 20834853 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agctctgatacatcagctaacagatgcctgtactGACAGGCATGAGGGGAGAGGGCACTACGTTACTTTGCATCTGGAGTCAAAATTCATGTTAAAGCTTGACCAGTATACACAAAAACTTCTCTATCTTCAGCGCCAAGGCCGGAGCGTCAGGAAGAAGAATGCAAGGCATAATGAGCTGTTTGGTcaagGGAGCAGTCACCactgagaaaagaagagaagtaTTCCTTCGCTGCCTGGTGGAGTATGTGGGGGGAACATGGCCTGCTCGCAGAACACTTTGATGAGGGTGAGGTCAATATTTCACAGCACACCATGAAGATCTTCACAGTGAAGGAAGAGGGTGCAACAGAGGATGAAGGTACCGTCCTTGAGGGTCAAGAGGTACTGGCTGGTCTTGGAAATGTCCCACAGGCATGTGCTGCACTTCTGGGGTTCATATATGCCTTGAATTTGCAGTACCCTAAACCACTGACATACACATTGGAAGTGTTTCAGAAGCTTTTTATGGAACAGGATGGACTGAAACTTTCTCCCAAGGTGCTGTCtcttaaaaacagctgttaatTAAGCCTTGTTATCTCGAATAGGCTTGAAGGAGAACGCTGGTGTAAAGTTGACTtggtgtaataaaacatgataacatttttttttactaaaacctGCCAATAAATGCAAAAGTGGTTAAAAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88410 lncRNA upstream 81939 20744976 ~ 20750081 (+) True G65494
TU88398 lncRNA upstream 262915 20567363 ~ 20569105 (+) True G65482
TU88386 lncRNA upstream 277648 20552464 ~ 20554372 (+) False G65476
TU88392 lncRNA upstream 279087 20551193 ~ 20552933 (+) True G65476
TU88375 lncRNA upstream 323573 20507375 ~ 20508447 (+) False G65468
TU88510 lncRNA downstream 121998 20956851 ~ 20957079 (+) True G65564
XR_002650155.1 lncRNA downstream 122850 20957703 ~ 20958378 (+) True LOC111192878
TU88526 lncRNA downstream 190949 21025802 ~ 21026070 (+) True G65576
TU88539 lncRNA downstream 381082 21215935 ~ 21217263 (+) True G65585
TU88590 lncRNA downstream 524517 21359370 ~ 21359667 (+) True G65626
XM_022671495.1 mRNA upstream 236719 20593666 ~ 20595301 (+) True LOC111192985
XM_022671492.1 mRNA upstream 334359 20417512 ~ 20497661 (+) True pawr
XM_022671489.1 mRNA upstream 434053 20299704 ~ 20397967 (+) False ppp1r12a
XM_022671484.1 mRNA upstream 434117 20299703 ~ 20397903 (+) True ppp1r12a
XM_022671510.1 mRNA downstream 575996 21410849 ~ 21438210 (+) True tmem214
XM_022671511.1 mRNA downstream 575996 21410849 ~ 21438210 (+) False tmem214
XM_022671504.1 mRNA downstream 605556 21440409 ~ 21547440 (+) False agbl5
XM_022671508.1 mRNA downstream 605556 21440409 ~ 21547440 (+) False agbl5
XM_022671506.1 mRNA downstream 605581 21440434 ~ 21547440 (+) False agbl5
XR_002650196.1 other upstream 1037741 19780663 ~ 19794279 (+) False LOC103037311
TU87956 other upstream 1491141 19280300 ~ 19340879 (+) True alyref
TU87957 other upstream 1553205 19276802 ~ 19278815 (+) False LOC103044219
TU87714 other upstream 2208521 18619860 ~ 18623499 (+) True G64990
TU87328 other upstream 3112592 17690209 ~ 17719428 (+) False G64698
TU88511 other downstream 122282 20957135 ~ 20957635 (+) True G65565
TU88525 other downstream 189322 21024175 ~ 21024574 (+) True G65575
TU88777 other downstream 795009 21629862 ~ 21684834 (+) False gen1
TU89211 other downstream 2104749 22939602 ~ 22949192 (+) False ccdc167
TU89229 other downstream 2164517 22999370 ~ 23003421 (+) True c7h11orf98

Expression Profile