RNA id: trnag-gcc_1


Basic Information

Item Value
RNA id trnag-gcc_1
length 71
RNA type tRNA
GC content 0.62
exon number 1
gene id trnag-gcc_1
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 12659448 ~ 12659518 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCCACACGGGAggcccgggttcgattcccggccaaTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85543 lncRNA upstream 280521 12377146 ~ 12378927 (+) True G63410
TU85450 lncRNA upstream 651929 12007285 ~ 12007519 (+) True G63329
TU85449 lncRNA upstream 669052 11986998 ~ 11990396 (+) True G63328
TU85415 lncRNA upstream 683895 11956885 ~ 11975553 (+) True G63303
TU85397 lncRNA upstream 847858 11811156 ~ 11811590 (+) True G63285
XR_002650191.1 lncRNA downstream 29801 12689319 ~ 12696748 (+) True LOC111192954
TU85623 lncRNA downstream 39530 12699048 ~ 12746828 (+) True G63460
TU85629 lncRNA downstream 148349 12807867 ~ 12811899 (+) True G63465
TU85656 lncRNA downstream 498807 13158325 ~ 13162362 (+) False G63488
TU85657 lncRNA downstream 498807 13158325 ~ 13163098 (+) True G63488
XM_022671356.1 mRNA upstream 802 12653022 ~ 12658646 (+) True iapp
XM_022671354.1 mRNA upstream 9349 12633279 ~ 12650099 (+) True LOC103023853
XM_022671352.1 mRNA upstream 32520 12604110 ~ 12626928 (+) True LOC103033113
XM_022671353.1 mRNA upstream 32520 12604110 ~ 12626928 (+) False LOC103033113
XM_022671351.1 mRNA upstream 63951 12558660 ~ 12595497 (+) True LOC103032798
XM_022671355.1 mRNA downstream 7662 12667180 ~ 12681027 (+) True pyroxd1
XM_022671360.1 mRNA downstream 41622 12701140 ~ 12743611 (+) False LOC103025111
XM_022671358.1 mRNA downstream 42579 12702097 ~ 12743611 (+) True LOC103025111
XM_022671359.1 mRNA downstream 42580 12702098 ~ 12743611 (+) False LOC103025111
XM_022671362.1 mRNA downstream 108320 12767838 ~ 12803571 (+) True LOC103034184
TU85565 other upstream 190546 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 3009361 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 3218884 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 4119325 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 4126216 8532759 ~ 8533232 (+) False LOC103041471
TU85654 other downstream 496708 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 2085217 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 3762716 16422234 ~ 16426613 (+) False arid2
TU86763 other downstream 3779702 16439220 ~ 16442449 (+) True G64289
TU86945 other downstream 4093525 16753043 ~ 16753560 (+) True G64431