RNA id: NM_001320209.1


Basic Information

Item Value
RNA id NM_001320209.1
length 2666
RNA type mRNA
GC content 0.51
exon number 24
gene id oca2
representative False

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 37904635 ~ 38048888 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cattatcatcattgcAGTCTCTACATCATCGTTGTCCATTTTTACTTCTGAAAGTGTCTGCAGGCCTCAGGTGTGATGTATTTGGAGAACAAGAACACTCTGGAGATGGAGATGTCTCAGACTGGAGCCCAGGGTCATCAGGGCAGGGTGCCTCACCGGAAGTCTGAGACGGTGGCTGGAAACTTTGACGAGCTGCGTCTGCTGGAGGGCTTTCCGGAGAGAAGGGAGACGCAGAGGATCCTGCAGGCCGCCGCCGTGCCCCCCGGACACCGCATCATCTACACTGACGTCCATCAGGAGGACAGGCGCAACTTCAGCGTTGTAAACTTCCTCAGAGGGAAATGCAGCCTGACCAACCACACTGAGAGGTCTCCACTGCTGAAGTTCTCCCAGGATGATGGTCTAACTTACATGACGCTGCATGACTCCAGTTTGAGCCCTGGAGAGGAGCTGTGGGATAACTCTGCTGAGCTGGAGAGGAGATGCCGGCTGGGCAGTGAAGTGACCAGTCTTTCCCGTTCCTTCTCTACTGAGAAAAGTGAACACAATTTCAGACTCTCCTCCAACCTCagATACTGTTTAAGCATCACGAAACTCGTCACCATCTTCAGCATTGTTGTCCTGTGTTCACTTTTCTTCAGCATGTATCCTGATCGAGAGAGACCCTGGAGGATGTTTGCAGTCTCATCCACTGAGAGCTTCTCCATGAATTTGACAGACTTCCGTGATAATGCCTTATTGAAGCTTCAGGTGGGTGGGCCCTTCATGACCGGAATGGAGGGCGTCCCAGCTCAGGAGTACATATTGATACAGGTGGAGCAAATGGTAGAAATAGGATCGCGCAGGAAACGTGTTCAGCAGATTCTGCATAACTGGACCATACCTTTACACTCAAAGAGGAATGATCAGATTCTTACGACAAGAACATTCGAGATGCTTGCTGGCGCTCCAATCTCAATAAATGTTCAGGCCTCCCTTCTGGACAATCAGGTGGTCCCTCTCTCGATGACGCACCAGTCTCTGTACGTAACGGTGGAAACACAGGTGGTGATAGCTGGAGTGATCCTGGCTGGAGTCTACGTGCTCATTATCTTTGAGATAGTCCATCGCACCCTGGCCGCCATGTTGGGGTCCCTGGCTGCTCTTGCAGCTCTGGCCTTCATTGGAGATAGGCCCAATCTGAAGACAGTAGTGGAATGGATCGACTATGAAACCTTGGCCTTGCTGTTTGGGATGATGATCTTGGTGGCCATTTTTTCAGAGACCGGCTTCTTCGATTACTGTGCAGTTAAGGCGTATCAGGTGTCCAGAGGAAGAGTGTGGCCAATGATCATCATTCTGTGCCTCATTGCTGCCATTCTCTCAGCCTTTCTGGACAATGTGACCACCATGATGCtcttcactcctgttaccaTCAGGTTGTGCGAGGTGCTGAATCTGGACCCCAGACATGTCCTAATTGCTGAGGTAATCTTCACTAACATCGGAGGAGCTGCCACTGCAGTGGGGGATCCACCCAACGTCATCATTGTGTCCAACCAAAACCTGCGCAAAACAGGGCTTGACTTTGCAGGATTTACAGGGTACATGTTCCTGGGGATCTGTCTGGTGCTCCTGACCTCCTTTCCGTTCCTGAGAATGCTCTACTGGAATAAGAAACTCTACAATAAAGAGTCCAGTGAGATTGTGGAGTTGAAGCATGAGATTCTGGTTTGGAGACAGACCGCACATCGCATCAACCCAGCCAGCCGGGAGGAGACTGCTGTGAAGTGTCTTCTCATGCAGAAGGTGCTCAACCTGGAGAGTCTCCTGCGCAAGCAGCTCAGAACCTTCCAGAGACAAATTTCCCAGGAGGACAAAAACTGGGAAAACATCATTCAAGAGCTGCAGAAAAAGcacagaATAACAGACAAAGTCCTGCTGGTGAAATGTGTGTCAGTGCTGTCCATAGTCATCTTCATGTTCTTCCTGAATTCCTTCGTACCCGGGATTCATCTGGAGCTCGGTTGGATTGCTGTCTTGGGGGCTCTATGGTTGCTTATTTTGGCTGATATTCAAGACTTTGAGATCATCCTGCACAGAGTGGAGTGGGCCACACTGCTCTTCTTTGCAGCACTGTTTGTTCTCATGGAgGCTCTGGCCCAGTTGCAGCTCATTGACTACATTGGGGAGCAGACAGCACTGTTAATAAAAGCTGTGCCAGAGGCGGAGCGGCTGGCCATCGCCATCATTCTGGTCATGTGGGTCTCAGCTTTGGCCTCCTCGCTCATAGACAACATCCCCTTCACCGCCACCATGATTCCAGTGCTGATTAACCTTAGTCAGGATGCTGACGTCAACCTGCCTGTGAAACCCCTCATCTTCGCCTTGGCTATGGGAGCCTGTTTAGGAGGTAATGGGACACTGATTGGTGCATCTGCTAATGTTGTGTGTGCTGGAATCGCAGAGCAACATGGTTATGGATTCTCTTTCATGGAATTCTTCAGGCTCGGCTTCCCCATGATGCTGATGACATGTACGATAGCTATGTGCTACCTGCTGGCAACTCACGTCGGGCTGGGCTGGAACACCTAAATCTGCCTCCTCTACCATCATCAAAGAGACTGTGCTTGTGTGtgcctgtggtgtgtgtgtgtgtgtgtgtgtgtaagagcggGAGAGAGTCC

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157584 lncRNA downstream 145840 37684056 ~ 37759160 (-) True G116653
TU157583 lncRNA downstream 220568 37640493 ~ 37684432 (-) False G116653
TU157582 lncRNA downstream 220568 37654085 ~ 37684432 (-) False G116653
TU157581 lncRNA downstream 220568 37669612 ~ 37684432 (-) False G116653
TU157572 lncRNA downstream 292713 37600824 ~ 37612287 (-) True G116646
TU157747 lncRNA upstream 197152 38246040 ~ 38247045 (-) False tubgcp5
TU157749 lncRNA upstream 197152 38246040 ~ 38248624 (-) False tubgcp5
TU157774 lncRNA upstream 306103 38354991 ~ 38357368 (-) True G116794
TU157912 lncRNA upstream 384451 38433339 ~ 38434506 (-) True G116908
TU157914 lncRNA upstream 437162 38486050 ~ 38487112 (-) True G116910
XM_007249107.3 mRNA downstream 308828 37442908 ~ 37596172 (-) True gabrb3
XM_007249108.3 mRNA downstream 309253 37442908 ~ 37595747 (-) False gabrb3
XM_007249110.3 mRNA downstream 309262 37442908 ~ 37595738 (-) False gabrb3
XM_022675795.1 mRNA downstream 395005 37442908 ~ 37509995 (-) False gabrb3
XM_007249109.3 mRNA downstream 395005 37442908 ~ 37509995 (-) False gabrb3
XM_022675804.1 mRNA upstream 10039 38058927 ~ 38146623 (-) False herc2
XM_022675803.1 mRNA upstream 10039 38058927 ~ 38146623 (-) False herc2
XM_022675802.1 mRNA upstream 10039 38058927 ~ 38146623 (-) False herc2
XM_022675799.1 mRNA upstream 10039 38058927 ~ 38146623 (-) False herc2
XM_022675800.1 mRNA upstream 10039 38058927 ~ 38146623 (-) False herc2
trnaq-uug_2 other downstream 811930 37092999 ~ 37093070 (-) True trnaq-uug_2
TU157486 other downstream 859212 37041361 ~ 37045788 (-) True G116581
XR_001518677.2 other downstream 873640 37023391 ~ 37031360 (-) False LOC103023810
TU156955 other downstream 1843071 36056563 ~ 36061929 (-) True LOC103028059
TU156811 other downstream 1946571 35955109 ~ 35958429 (-) False LOC103031109
TU157786 other upstream 332382 38381270 ~ 38384598 (-) True G116805
XR_002650725.1 other upstream 2311513 40360401 ~ 40363960 (-) False LOC103040080
XR_002650728.1 other upstream 3532945 41581833 ~ 41582017 (-) True LOC111193790

Expression Profile