RNA id: TU154003


Basic Information

Item Value
RNA id TU154003
length 309
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G113985
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 27370974 ~ 27371471 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atatgatatgatacacccctaactgaaatatttaaaaaataaaattattctcATCAGACTGTAACAGAAGGGTGGCTGATAtctcagggtataatatcgttcatgatattcaaaaatgatgacgatattattgtgtacgatttGATGTGTGGTAGTTCTTGTCACTTATTTTACTGATCAGAATTTTCAGTCTTACCCTTGAGTGCGAGGATCTTCCCACTGTGTTGTCCTTGTAGGATGATGAACAAAGTACATTCTTCCATTACTGTCAGTTCGTTTCTCCCATCCTTGTGGTAAAGGACCCAGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153998 lncRNA upstream 2058 27363564 ~ 27368916 (+) True G113982
TU153995 lncRNA upstream 12175 27353786 ~ 27358799 (+) True G113981
TU153991 lncRNA upstream 30200 27338862 ~ 27340774 (+) True G113978
TU153975 lncRNA upstream 85930 27274383 ~ 27285044 (+) True G113965
TU153972 lncRNA upstream 104429 27266332 ~ 27266545 (+) True G113962
TU154010 lncRNA downstream 8704 27380175 ~ 27385144 (+) True G113988
TU154031 lncRNA downstream 97509 27468980 ~ 27469300 (+) True G114008
TU154035 lncRNA downstream 141928 27513399 ~ 27514868 (+) True G114011
TU154060 lncRNA downstream 179593 27551064 ~ 27637540 (+) True G114021
TU154055 lncRNA downstream 271183 27642654 ~ 27646150 (+) True G114020
XM_022675615.1 mRNA upstream 1025201 26323691 ~ 26345773 (+) False tfap2c
XM_022675616.1 mRNA upstream 1025201 26323691 ~ 26345773 (+) False tfap2c
XM_022675614.1 mRNA upstream 1025201 26327284 ~ 26345773 (+) True tfap2c
XM_022675613.1 mRNA upstream 1025201 26327320 ~ 26345773 (+) False tfap2c
XM_007252676.3 mRNA upstream 1051481 26271043 ~ 26319493 (+) True rtfdc1
XM_022675092.1 mRNA downstream 19543 27391014 ~ 27489522 (+) True LOC103037845
XM_022675620.1 mRNA downstream 204763 27576234 ~ 27640363 (+) True snta1
XM_022675093.1 mRNA downstream 604910 27976381 ~ 28022819 (+) True ralgapb
XM_022675624.1 mRNA downstream 670301 28041772 ~ 28127236 (+) True kcnq2
XM_022675625.1 mRNA downstream 670302 28041773 ~ 28127236 (+) False kcnq2
TU153992 other upstream 18530 27347449 ~ 27352444 (+) True G113979
TU153993 other upstream 18530 27347449 ~ 27352444 (+) False G113979
TU153586 other upstream 2028206 25342455 ~ 25342768 (+) False ube2o
TU153545 other upstream 2108753 25261386 ~ 25262221 (+) True G113642
TU153256 other upstream 2895636 24474078 ~ 24475338 (+) True G113422
TU154011 other downstream 19558 27391029 ~ 27444946 (+) False LOC103037845
TU154976 other downstream 2754864 30126335 ~ 30129896 (+) True G114698
TU155153 other downstream 3478838 30850309 ~ 30880553 (+) True G114841
TU155369 other downstream 4521814 31893285 ~ 31894351 (+) True G115024
TU155443 other downstream 4757834 32129305 ~ 32134868 (+) False LOC103027407

Expression Profile