RNA id: XM_022675092.1


Basic Information

Item Value
RNA id XM_022675092.1
length 2149
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC103037845
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 27391014 ~ 27489522 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGGCTGAGAGGAGGAGGGagcgacagcagcagcagcatcagcagcagcatcatttCAGTACAGTATCTGTAACACAGCCTGTGCAGCATCAGCACCACCAGTCTGAGATTGAGAAAGCAGTTTCAGACAGCACAAAGAAAAGGCTCCTGCCCGCCGAATCTGACCAATTACATTACCCTCTGCTTCTCAGACTCCTCAGTAATCTTCCAGATCCTCCTGAAGATGCTGGCCTGCACAGAGATGATCACTATGTGTCTCCAGTCGGCGAAGCGAGAGCATCTGCGCTCCAAGCAAcaacagcagctgcagcagaacCATGGACTTTCCATTTTTCACGACATTTTCCGGCGTGCAGACAAAAACGatgACGGAAAGCTCTCATTTGAAGAGTTCAAAGCATACTTTGCTGACGGGATTCTGACAACCGATGAGCTCCAGGAGCTGTTCTATTCCATTGACGGCCGACAGGCAAACAATCTCGACACAGACAAGCTGTCAGTGTCCCTCAAGCCTCGATCTGCTGTGacaaatctctctctgtctctcttcctgCAGGAGTACCAGGGCTCCTCTGTGTTAGGGCAGTTCGTGACACGCTTCATGTTGAAGGAGACGTCCAGCCAACTGCTGTCTCTTCAGATGTCTCTGCAGTGTGCCATGGAGGCCGTGGAGGAGCAGAGTAGCCCTGCACCggCCGAGGTGAAGGTACCAGAGCATCTGTCGGTACAGAAGAATAACAGGAGATGTGGACGCaaagtgcagaaaaacatgTGTCTGTCTCCTACAGACCCGTACTCTGGAATCCTCACTACAGGTGTTAGTGTGGATACAGATGATCACTGGTCTTCTCAGATCAACagactccagcagctcattgaCAAACTGGAATGCCAGAGTCCAAAGCTGGAGCCCCTGAAAGAAGACCCTCTGGCCAGCACGTATAAATCAAACATTCTGTTGGTGCAGAGGCAGATGGCAGTGACAGAGGAAAATCTTGAAGAGTTCCAAAAGGCCCTGAAAAGCTATGCTGATTCCACCACCAATCAGAGTGACAACCTTCATGTGTCCATCCAGAAGCTGCCTGAGAAGAGCTGctacataatatatgagttcTGGCAGGATCGCATCTCCTGGATGAGTTATCTGCAGTCTGAGGCCAGTAAGACTTTCCAGCGCTGTATCATAGACATGCTGGAGGATCCTGAACTCATCTCTACGATGCTTATGCCTGcatccTGGTGGATCATGACAAACAATTAACTCCCGAAAGAGCAGTGTGCTGTGCCTCCACCCCTCCAAAACAACCACAATCTGAAAGCGATCCTGCGTGTGTTCGCCTCTCCACGAGCTAGAGAACAGCGTACTCATCTCCTCCTCACTTGACTGTACCTCATGGCTTCGTTTTTGTGTTCCTTCAACAATCcttctgtacaaaaaaaagagtaaaaaaaaaaaagaagaaaacagcaGCCAGGCATGGTTCTAATCTCTCTAGCATGTATAGAAAATTAAAGTGAGGCCAGTGGCGAAGCTTTTGAAGCTGACGCGGCTTTGATGTGGCAACCGCTCACGGATTAGAAAAGTGAAGAACTTTCCTAAAAAAACGTAATGAAACACAAGGGAAAGCGGAAAGAAAGGAATACCACTACTTGCTTTGACGTCTTCGACTAGGTGTTTACTACCCGGGGTGCGATTTacgaaaaaattaaataagaaaaatagcTGTTTAAGATTGCATGCATGTTAAAACTTTAGTTTCAGACATAGCTGACTTAAAGCCATCCTTGCAACTCCATGCTTGCTCAAGGACACTATTTCTAATGATAAGATCAATCTGTGTGATTATGTGGATAGAATAGTCCTTATGTGGAACTTAGCTGTTCTTCTGCCTTGTGGTTCCTCAGTCGATATGTTAATGTTCCCGAATCCCGACGATTCTGTTTGATTTAAGCTGTACGTATGCCGATTCACTGAATCAACTTTTGCTTTTTCTTATCATTTTCCGAACATGGAACTCTGTATATGGTGTGTTAAACTGCTTGACGTAAAGAAATATGCTGAGATTTATtaatggatttatttatttgaggtTTATCTAATGTATTTAAGCATATAAGAAGAAATAAACCTAAGAATATCATTTGTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154010 lncRNA upstream 5870 27380175 ~ 27385144 (+) True G113988
TU154003 lncRNA upstream 19543 27370974 ~ 27371471 (+) True G113985
TU153998 lncRNA upstream 22098 27363564 ~ 27368916 (+) True G113982
TU153995 lncRNA upstream 32215 27353786 ~ 27358799 (+) True G113981
TU153991 lncRNA upstream 50240 27338862 ~ 27340774 (+) True G113978
TU154035 lncRNA downstream 23877 27513399 ~ 27514868 (+) True G114011
TU154060 lncRNA downstream 61542 27551064 ~ 27637540 (+) True G114021
TU154055 lncRNA downstream 153132 27642654 ~ 27646150 (+) True G114020
TU154050 lncRNA downstream 153909 27643431 ~ 27645415 (+) False G114020
TU154053 lncRNA downstream 153909 27643431 ~ 27646150 (+) False G114020
XM_022675615.1 mRNA upstream 1045241 26323691 ~ 26345773 (+) False tfap2c
XM_022675616.1 mRNA upstream 1045241 26323691 ~ 26345773 (+) False tfap2c
XM_022675614.1 mRNA upstream 1045241 26327284 ~ 26345773 (+) True tfap2c
XM_022675613.1 mRNA upstream 1045241 26327320 ~ 26345773 (+) False tfap2c
XM_007252676.3 mRNA upstream 1071521 26271043 ~ 26319493 (+) True rtfdc1
XM_022675620.1 mRNA downstream 86712 27576234 ~ 27640363 (+) True snta1
XM_022675093.1 mRNA downstream 486859 27976381 ~ 28022819 (+) True ralgapb
XM_022675624.1 mRNA downstream 552250 28041772 ~ 28127236 (+) True kcnq2
XM_022675625.1 mRNA downstream 552251 28041773 ~ 28127236 (+) False kcnq2
XM_022675626.1 mRNA downstream 652406 28141928 ~ 28149421 (+) False arfrp1
TU153992 other upstream 38570 27347449 ~ 27352444 (+) True G113979
TU153993 other upstream 38570 27347449 ~ 27352444 (+) False G113979
TU153586 other upstream 2048246 25342455 ~ 25342768 (+) False ube2o
TU153545 other upstream 2128793 25261386 ~ 25262221 (+) True G113642
TU153256 other upstream 2915676 24474078 ~ 24475338 (+) True G113422
TU154976 other downstream 2636813 30126335 ~ 30129896 (+) True G114698
TU155153 other downstream 3360787 30850309 ~ 30880553 (+) True G114841
TU155369 other downstream 4403763 31893285 ~ 31894351 (+) True G115024
TU155443 other downstream 4639783 32129305 ~ 32134868 (+) False LOC103027407
XR_002650704.1 other downstream 5115435 32604957 ~ 32605732 (+) True LOC111193763

Expression Profile