RNA id: TU154916


Basic Information

Item Value
RNA id TU154916
length 225
lncRNA type inter_gene
GC content 0.23
exon number 1
gene id G114647
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 29979614 ~ 29979838 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acaataataataataatatacattaaatcatatataaatatatttcactttcaaacattaacaatattactcaattggttattaaacgtttcatttcgtatacgtgtagagttaataattcaaggaaactgatgaaaaatcatttacatttacaccctttacattttagtcgactaaatttactgtaattttagtagactatattcttatgacattaagtcgact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154912 lncRNA upstream 8658 29969935 ~ 29970956 (+) True G114643
TU154909 lncRNA upstream 20565 29958598 ~ 29959049 (+) True G114640
TU154906 lncRNA upstream 94179 29883273 ~ 29885435 (+) False LOC111193669
TU154904 lncRNA upstream 94537 29882843 ~ 29885077 (+) False LOC111193669
TU154892 lncRNA upstream 139894 29839262 ~ 29839720 (+) True G114627
TU154953 lncRNA downstream 81340 30061178 ~ 30108601 (+) False G114676
TU154950 lncRNA downstream 124746 30104584 ~ 30111760 (+) True G114676
TU154951 lncRNA downstream 130076 30109914 ~ 30111760 (+) False G114676
TU154994 lncRNA downstream 245265 30225103 ~ 30225315 (+) True G114712
TU154995 lncRNA downstream 253908 30233746 ~ 30235372 (+) True G114713
XM_007253371.3 mRNA upstream 29653 29924349 ~ 29949961 (+) True LOC103041068
XM_007253370.3 mRNA upstream 61861 29899564 ~ 29917753 (+) True LOC103040768
XM_022675094.1 mRNA upstream 91636 29882371 ~ 29887978 (+) True LOC111193669
XM_007253428.2 mRNA upstream 251277 29712485 ~ 29728337 (+) True LOC103032161
XM_022675660.1 mRNA upstream 269828 29698600 ~ 29709786 (+) False stau1
XM_007253362.3 mRNA downstream 554289 30534127 ~ 30574692 (+) True LOC103038582
XM_022675675.1 mRNA downstream 927491 30907329 ~ 30931217 (+) True padi2
XM_022675676.1 mRNA downstream 933440 30913278 ~ 30931217 (+) False padi2
XM_007253357.2 mRNA downstream 1205629 31185467 ~ 31231831 (+) True LOC103036390
XM_022675678.1 mRNA downstream 1217766 31197604 ~ 31231831 (+) False LOC103036390
TU154011 other upstream 2534668 27391029 ~ 27444946 (+) False LOC103037845
TU153992 other upstream 2627170 27347449 ~ 27352444 (+) True G113979
TU153993 other upstream 2627170 27347449 ~ 27352444 (+) False G113979
TU153586 other upstream 4636846 25342455 ~ 25342768 (+) False ube2o
TU153545 other upstream 4717393 25261386 ~ 25262221 (+) True G113642
TU154976 other downstream 146497 30126335 ~ 30129896 (+) True G114698
TU155153 other downstream 870471 30850309 ~ 30880553 (+) True G114841
TU155369 other downstream 1913447 31893285 ~ 31894351 (+) True G115024
TU155443 other downstream 2149467 32129305 ~ 32134868 (+) False LOC103027407
XR_002650704.1 other downstream 2625119 32604957 ~ 32605732 (+) True LOC111193763

Expression Profile