RNA id: TU155153


Basic Information

Item Value
RNA id TU155153
length 2798
RNA type TUCP
GC content 0.41
exon number 2
gene id G114841
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 30850309 ~ 30880553 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacacacacacagacacacacacacacacacacattctttggAACATATTATCCTATTATGGAAAGTGCAGCATTTATAGGATTGTACCAGGTGGGGTTAAACCAGACCATCGccaaaagagaagagaaagagaaaaagagagaacataCTGCACTAGAAACCATTTTACACctttaacaatataaaaaggTACTTAAACTCTTCTTGGAGCAATTCCAtcgaaaaaacatttttgtagtGGAGACTGTCTGTGACTTTGCTTCAACAATCATCTGAAGTACCTTCATTCATTCAGTAAAGAAGGAATGCTTGTGGAttcaaaaagtgctaaaacTCAAAAGAAAGTCCTCAGTTGTGCTGTGGAAAAAGCAAGAACTCAGCACTGAGCTCCTCTGCTCCCTGCAACTTACTCCCTGCCACTGGTTTGGGGAAATCAAAATGCAGGACCTTTATTTTTTCGAGGTCAGCATAGTGTGAATGATATGAATACTGACAATGGCACAGATACAGCATGTCCAAAGCTCTATTACTAACTCCCTCAGACATCTTACTGAGGCTAGAGTCAGAGTCAGCCTCTCAAAGAGAACTAAACCATTGTTAAAGCCTATgctctgcatttttattttgaggCTCTGAGATGATCACTTCATCTTATGAAATATACTGGTAACTACATACTTTAGTATAGCACTGATGAGACTGAGGCTGGTCAGGTTTATAATGTAGATGGCTATGTTCAGACTTCCAACAAAAATCCAAAATACATGATAACATCACATTACTTTCGTAATTTATGAGATAATTATTACAAATGAGTCTGGTtataatatcgcaatattattTCAGAACCCAAATCTAGTATCCAGATTGATATTTGATAGATTTGATAATcagccagaaaccacatgaaGTCCTTTGCTAATCAGATCCaatgttatttaaatgcaaTGAAAGCGCAATGGTGCAAGATGAGGACCAAAGGTTAGTTGCAGGTGCATTCGCAGACACAGACCCCACAGCAACTCTTGCAAATAACTGTGCAAATCTGCTCTGGTCACTTGCaaatagggctgcacgatattggaaaaatttgacattgcaatttttatttttatttttttctttccaccCTCCCCCTCCTGCTTCTCGGGCAGCAGctgcctgtcactcacacagacacagagacagtgctgttCACTCAGAAAACTGcaacactgtgtatctactttttGTGTccagaatcaaaacattgcaacatgacgtgtttgatttaactgCCTTAGgtgacattgcacgtcctgcAATTTCAAAATTGCACATTGCGATTATGATGCCTAAACAATATATCGTGCATCCCTAATTGCAAATGAATgaagtaagtaaaaaaacaaaaaatgaattctTTTTTATGTATGCACTCATACATATGGTAACCAGGGAAGAGTCAAGTTTCAAGATGATTCAGGCTCTTTCTATTTTGCTAGTCGTGCAGGTTCAGAAGGTACACTgcagaagaaggaggaggaggaggattcaGAGGAGATCGTTAGAAACAAATCAGTGAACTGCTAAAAaatcaatatacagtacagcacTGTAAGGTACCAAGTGGGAATGAGTGGAGCTATGACAAAGTGGGAATGAATTTAACCCTGTAAGACTGCTGCACACCGATTGTCAAAGGTGCAATGGACCACGTCTTGCTGTTCAATATAGTGCCTCTTGTAAAAAGGAGGAAAATAGGGTGCATATATATTTGCCTTTGAGGACAGCACTAAACATATAAAACGCTTTATCTGACAAATACAGCTTACAACTTCAGCTTCAGCTTACAATATTGGGCTGGAAACAGGGGAATGAATAGTGTTCCACTCTTACAGGTAATAATGTACACGGGCCACAGCCAACTGCTAAATGTGACCAAAAGGAAAAAGACATACAGCACAGCTACTCGGCTCCCTGGCGGCTTAAGACGGCTCTAATAAATGACAGGTGGGTTGGCCACTCTTTGCCTTGACTCATGGGGAGCATCCTTTCACAGTCTGTGCACAAACAAACAGGTCCTGTTTCAGAGCTTGAGCAGCACTAAGAGGGCTTAGAGTCCAACGCTTTGGCATACACAGAATGAGTTCCAACTCCCCAAAATTGGGGAAacaggagtaaaaaaaaaatgataataataaaataataaaaataatgtcatgGGTGAAGAAGGCATTGCAAGCGAGGCTTTTGGAAACAATACATTCAGAGCCTCAACTTAAAGCAGAGGATTCATTTTCTTATGTAATCAGAAGGTTCATGATGGTccatcatcattatcaccatcaccaccaccatcttcAAATCCTGGAAACgcttctctttctatctttacAGGAATCCAACACACGCCTACACCTCAGGGGGGTTCCAGCAAAAAGGTTGGGAtttgaaaaaatgtaaacacagaagaaaaagaaaggtgtttcttttttcattttggcAGAGTGCGAGTGAGTTTTCTCAGAGGAGGTAGTGGGACGTAAGGGCACACTGAGagaagctggagctgagctggagagTGTGGTGGGTCAAAGCGGACCATGAGGGGGTAAAAGCAGCATTTGGTTGGGTTCTATGTGGAAGGTGGACTGTGATCCTGAGGGTTAGTCCTGTAAGAGTCCTCCTCATGCCCACCTCTCCTCTGCTCTTGATTGTCCCCTACCGAAGTCCCCAAAGGAGGCTTATGTACAGTCACTGGCCCCTGGGGTGGGGAAACATGGTGGGGGTCCACTCCACCCCAAAACGACCTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155044 lncRNA upstream 198259 30651006 ~ 30652050 (+) True G114754
TU155039 lncRNA upstream 212953 30626573 ~ 30637356 (+) True G114752
TU155037 lncRNA upstream 224879 30621974 ~ 30625430 (+) True G114751
TU155030 lncRNA upstream 229250 30609226 ~ 30621059 (+) True G114745
TU155025 lncRNA upstream 246800 30592730 ~ 30603509 (+) True LOC111193762
TU155179 lncRNA downstream 229780 31110333 ~ 31114539 (+) True G114867
TU155180 lncRNA downstream 229780 31110333 ~ 31114539 (+) False G114867
TU155235 lncRNA downstream 433182 31313735 ~ 31314348 (+) True G114910
TU155237 lncRNA downstream 433903 31314456 ~ 31329476 (+) True G114911
TU155289 lncRNA downstream 525743 31406296 ~ 31406563 (+) True G114955
XM_007253362.3 mRNA upstream 275617 30534127 ~ 30574692 (+) True LOC103038582
XM_007253371.3 mRNA upstream 900348 29924349 ~ 29949961 (+) True LOC103041068
XM_007253370.3 mRNA upstream 932556 29899564 ~ 29917753 (+) True LOC103040768
XM_022675094.1 mRNA upstream 962331 29882371 ~ 29887978 (+) True LOC111193669
XM_007253428.2 mRNA upstream 1121972 29712485 ~ 29728337 (+) True LOC103032161
XM_022675675.1 mRNA downstream 26776 30907329 ~ 30931217 (+) True padi2
XM_022675676.1 mRNA downstream 32725 30913278 ~ 30931217 (+) False padi2
XM_007253357.2 mRNA downstream 304914 31185467 ~ 31231831 (+) True LOC103036390
XM_022675678.1 mRNA downstream 317051 31197604 ~ 31231831 (+) False LOC103036390
XM_007253356.3 mRNA downstream 353630 31234183 ~ 31263040 (+) True LOC103036086
TU154976 other upstream 720413 30126335 ~ 30129896 (+) True G114698
TU154011 other upstream 3405363 27391029 ~ 27444946 (+) False LOC103037845
TU153992 other upstream 3497865 27347449 ~ 27352444 (+) True G113979
TU153993 other upstream 3497865 27347449 ~ 27352444 (+) False G113979
TU153586 other upstream 5507541 25342455 ~ 25342768 (+) False ube2o
TU155369 other downstream 1012732 31893285 ~ 31894351 (+) True G115024
TU155443 other downstream 1248752 32129305 ~ 32134868 (+) False LOC103027407
XR_002650704.1 other downstream 1724404 32604957 ~ 32605732 (+) True LOC111193763
TU155511 other downstream 1729896 32610449 ~ 32611203 (+) True G115133
TU156039 other downstream 3215364 34095917 ~ 34096865 (+) True G115510

Expression Profile