RNA id: TU155719


Basic Information

Item Value
RNA id TU155719
length 1324
lncRNA type inter_gene
GC content 0.50
exon number 9
gene id G115278
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 32785882 ~ 32795500 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caccttaACAGGAACAAATTTCCGGAGGAATTTGACCCCATGTGTCTCCATGTGGTCTCCTGCACGGTTGGCCATGTCCTGGTCGAAGCCTCTCAGCAGAATGGAGCGTACCATTATGGTGACATCTAGCCCCAGACCAGCCAGGAACCCGCCGCACTCAAGAGCAACGTATGATGCTCCGATCACTAGTGTCTTACCAGGACAATAGGGTAAGGAGAACAGGTCATCACTGGTGATGCAGTACTCTTTATCTCCGGGGATGCCCAGGTAGCGCGGCCGCTCTCCAGTCGCCAGCACAAATTTGGCTGCTGTGTGAAATGTCTCCTTACCACGCCTATTTGTGGCCTTGATTTTGTGAGGCTCCACAAACTCTGCGTAAGAGTTGACATAGTTGACGTTCTTGTCTCGGAGACTCACTCTGTAACCCCAGTTCAAAGAACCAATGTAGTTATTCACTGCAGTCTTCATTGTCTCCCAGTTATGGCTCACTTGCTCACTGAACTCCCAGCCAAATTTACGAGCATCTTGCAAGGCCGTACCCATTAGTGCAGTCTGGTGCATTAATTTCTTTGGAATACAGCCTACGTTCACACAAGTGCCACCCAGACCCCAGGTAGTGCCCTTAGGTGTGGGGACAACATAATCCAGAACCATGACCTTCTTCCCCAAATTTGCTGCTtcCTTTGAGCAGGCCAGGCCTCCGGAGCCTCCTCCTATGACAATCAGGTCATAATCGTACACCTCGCTCTTGTCTCCCAGCAGCTGCTGGAGCAGGCCGTCTTTATGTGCCTTTATGGTGTTATCACAGCCACCGACATGGGTCTTGTTGACGAAGACGTTAGGGACGGTTTTCTGTCCAGTCATCTCCATCAGCAGATCCTGGAAGTTGGAGCCATTCTCCATCAAATCCAGTTCAATGATGTTACATTCCACATTCAAATCATTAAATAGCTCTTTTACCTTCGTACAGTAGGGACAGTAGCTTTTACTAAACACCACGACCGAGTTGGTGTCAATCAGCTCCTGTATCCGAGCTTTAATCTGGTCCCGGCCGGCGTCGATCTCTACCGGCGGCATGATTATACCGGTAAAAGCGGCTAGTGTTTACTGGTTCACCAGAATCGGcgggctttctctctctctcagctacAGGGCTAGGTTAGGTTAGCACATTAGCCAGCAGCCGGTTAGCTAGCAGGCTAGCAAAGTTCTCCGAGAAACTCTCCGCGCGCAGAAACGAGCCGCTCTACGTCCAGATACGATCCCTGCAGTTCTTACCGCGTAAGTAAACTAAAGAGAAACAGAGTAAAAAACGGACTCGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155527 lncRNA upstream 88985 32696304 ~ 32696897 (+) True G115145
TU155517 lncRNA upstream 167848 32615963 ~ 32618034 (+) True G115137
TU155503 lncRNA upstream 176017 32577378 ~ 32609865 (+) True G115127
TU155472 lncRNA upstream 465237 32245266 ~ 32320645 (+) False LOC103025619
TU155477 lncRNA upstream 491941 32292488 ~ 32293941 (+) True G115106
TU155733 lncRNA downstream 5399 32800899 ~ 32801184 (+) True G115288
TU155799 lncRNA downstream 557832 33353332 ~ 33357929 (+) True G115347
TU155804 lncRNA downstream 564637 33360137 ~ 33363038 (+) True G115350
TU155837 lncRNA downstream 626432 33421932 ~ 33423595 (+) True G115372
TU155801 lncRNA downstream 628176 33423676 ~ 33426865 (+) True G115349
XM_007253312.2 mRNA upstream 38914 32729339 ~ 32746968 (+) False LOC103021538
XM_007253311.3 mRNA upstream 38914 32733504 ~ 32746968 (+) True LOC103021538
XM_007253314.3 mRNA upstream 57625 32710506 ~ 32728257 (+) True LOC103022276
XM_007253315.3 mRNA upstream 141098 32631259 ~ 32644784 (+) True LOC103022786
XM_007253419.3 mRNA upstream 185047 32591860 ~ 32600835 (+) True zxdc
XM_007253301.3 mRNA downstream 602508 33398008 ~ 33407467 (+) True LOC103045271
XM_007253300.3 mRNA downstream 880557 33676057 ~ 33726617 (+) True LOC103044965
XM_007253299.3 mRNA downstream 934938 33730438 ~ 33767084 (+) True LOC103044649
XM_007253290.3 mRNA downstream 1421652 34217152 ~ 34225638 (+) True thumpd3
XM_022675707.1 mRNA downstream 1431843 34227343 ~ 34244865 (+) True LOC103027408
TU155511 other upstream 174679 32610449 ~ 32611203 (+) True G115133
XR_002650704.1 other upstream 180150 32604957 ~ 32605732 (+) True LOC111193763
TU155443 other upstream 651014 32129305 ~ 32134868 (+) False LOC103027407
TU155369 other upstream 891531 31893285 ~ 31894351 (+) True G115024
TU155153 other upstream 1905329 30850309 ~ 30880553 (+) True G114841
TU156039 other downstream 1300417 34095917 ~ 34096865 (+) True G115510
XR_001518742.2 other downstream 1535498 34330998 ~ 34338917 (+) False rbm38
TU156151 other downstream 1584804 34380304 ~ 34391959 (+) False LOC103038162
trnaf-gaa_1 other downstream 1631968 34427468 ~ 34427540 (+) True trnaf-gaa_1
TU156333 other downstream 2125201 34920701 ~ 35008942 (+) True G115736

Expression Profile