RNA id: TU156333


Basic Information

Item Value
RNA id TU156333
length 1240
RNA type TUCP
GC content 0.50
exon number 8
gene id G115736
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 34920701 ~ 35008942 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttattttaaaaacatatgtaCAAAACAGGTAACTACAACAAAGAAAATTACATACAGGTTgttgcataaaactgtgatcaTTACATAAAAGCTGCATGATGCATTTCAGAGTGAGTCCCACAGGTATTTTCCACTGAGTGCTGCATGAATGAATGAGTCCGGTTTCCGGTACACTGTCGATTACTCCTCAGAGACCTGCAGCCGTGCTTTAGCCTCTTGGATCGTTCCCCGGGATTCTGCTGATCGACACATCACTGAGGGCGGGGCTTGGTGACCTTGATGTAATTTCTATAATCTCATGATTGGTTACTTCCAGCGTTGTGGAAACCGCTTTCTGGGGCGTGTTCTGGACTGATGCAGGATCAGCTCCTGAACACGACGCCTCCACCGGCTTCTTCTCCTCTTCCTGCTTCATCTGAGTCCGTCTTGAAGTCTCCAAACGACCTCTGACTTGAGCGATGAGACGGGAAAATTCACTGCTGTGTTGTTTCCGGTAGTTAGAGTTCAATTGTTCAATCTCTTCAGCTGTCTGGTTCTTTGTGATGGGTATTGCAGGTTTACTTTTACTCCCCAGCTGATTTTTAGTCTTCTCATTGTTCTCAACCTCTCTAGCAATGTCTTCACCTGATCTGGGGTTGAGTGCGTCACACTGGGCGTTGAATATGTGGGTGAACTCCTGGTGTCGTCTGATGAGCTGCTCTCTGGAGCCCTGGGTGGACAGGTGGCAGTCTCGAAGTCGTCTCTTGAGCTCAGGGATAGTCATCAGTGTATACACCAGCTTAGACATCGGCCTACGCCTAGCAGAACTTCTGAGGCCCTCCTTCTTCTCATCTCTGCTCAAACAAGCATCCAGATGTTTATTGATGTGCTGTTGAGATATGGCCACTTCACACACTGGACACTCCACTTTGACAGTCGCCTTAGAAACCTGTGATGTGGAGGGAAAGGCAGACACATCCATCTTTTCCTCCTTCACTGTGGTGCTCTTAGCCTCCACCCTCTCCTGCTTGAGGTCTCTGGGGGGCTGCACGCACACCTCCATGGGTTCCTCCTTTACTGGGCAGGGAGGCATGAGGTCGGCTTTTGCCCCTGACGAGGGGGTCGCGGCGGTTCGTTTCTGGAAAAAGTGCGTCAGAGGGGTGCCCTCTTTCCTGGGGCACTTCTGTCTTGCTGCTTTGCCTTTCAAAGCCACAGAGGGGGTCTTGGGGGAAATCGGAGGAGACTCGAAATTTGCCCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156179 lncRNA upstream 185774 34688232 ~ 34734927 (+) True G115619
TU156174 lncRNA upstream 234321 34672853 ~ 34686380 (+) True G115614
TU156093 lncRNA upstream 709827 34210118 ~ 34210874 (+) True G115557
TU156041 lncRNA upstream 803875 34116398 ~ 34116826 (+) True G115512
TU156040 lncRNA upstream 806423 34113596 ~ 34114278 (+) True G115511
TU156347 lncRNA downstream 63861 35072803 ~ 35130073 (+) True LOC111193767
TU156356 lncRNA downstream 193975 35202917 ~ 35204176 (+) True G115755
TU156358 lncRNA downstream 228678 35237620 ~ 35238160 (+) True G115757
TU156365 lncRNA downstream 271667 35280609 ~ 35280927 (+) True G115764
TU156366 lncRNA downstream 279701 35288643 ~ 35289248 (+) False G115765
XM_007253265.3 mRNA upstream 96992 34815978 ~ 34823709 (+) True cav3
XM_022675715.1 mRNA upstream 116420 34798245 ~ 34804281 (+) True LOC103023460
XM_022675714.1 mRNA upstream 140936 34777298 ~ 34779765 (+) True LOC103034490
XM_007253267.3 mRNA upstream 147766 34761583 ~ 34772935 (+) True parp3
XM_007253268.3 mRNA upstream 165398 34689863 ~ 34755303 (+) True LOC103035135
XM_007254372.3 mRNA downstream 245154 35254096 ~ 35269371 (+) True hemk1
XM_022675719.1 mRNA downstream 300705 35309647 ~ 35321059 (+) False LOC103023619
XM_022675718.1 mRNA downstream 300705 35309647 ~ 35320134 (+) False LOC103023619
XM_007254349.3 mRNA downstream 453858 35462800 ~ 35471205 (+) True LOC103022280
XM_007254347.3 mRNA downstream 494114 35503056 ~ 35523915 (+) False LOC103021651
trnaf-gaa_1 other upstream 493161 34427468 ~ 34427540 (+) True trnaf-gaa_1
TU156151 other upstream 528742 34380304 ~ 34391959 (+) False LOC103038162
XR_001518742.2 other upstream 581784 34330998 ~ 34338917 (+) False rbm38
TU156039 other upstream 823836 34095917 ~ 34096865 (+) True G115510
TU155511 other upstream 2309498 32610449 ~ 32611203 (+) True G115133
XR_002650708.1 other downstream 48208 35057150 ~ 35076626 (+) False LOC111193767
XR_002650712.1 other downstream 547020 35555962 ~ 35559726 (+) True LOC103045376
XR_002650711.1 other downstream 547037 35555979 ~ 35559726 (+) False LOC103045376
TU156582 other downstream 665706 35674648 ~ 35676035 (+) True G115917
TU156626 other downstream 721437 35730379 ~ 35733579 (+) False G115931

Expression Profile