RNA id: XM_022675719.1


Basic Information

Item Value
RNA id XM_022675719.1
length 1320
RNA type mRNA
GC content 0.34
exon number 5
gene id LOC103023619
representative False

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35290828 ~ 35363640 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAGCTGAAGCCTGAAGTAGAGGCAGACGAGGGTCACCTGGAGGATCTTCACTTCTGCACTAGTGACTTCCTAAAGCAAAGGAATAGAAAAGCCTATCTGTTTTCCAACTActtaagaaaaatatcagaatgtCAGAAGATTATCTAAAGGAGGAAATGTGCACTCTTGGAGACACATACATGTTCACAGTGGACGTGAGTGCATTCTCGCCAGAACAAGTCATTGTTACCTCATCACAAAACATCATTCAGGTTTCTGCTGAAAAGCTGGCATCAGATGGTACCGTCATAGACACATTTTTCCACAAATGGCAGTTTCCTCCAGATGCAGACCCCATGTCAGTGAGCTCATCCTTGGGGCAGGGTGGTGCACTTACAGTTACAGCTTTTAAACACAAGACAAAAGTTAAGTGATCCATACACCTTTATGATGGCCTTGACTGAAGACTGAAGAAAGGCACTTCAAATTATtccaataaataatataaacattttgagatgctttattttaaatgcaacaACAATCAGTACATTAAAAAAGTGTGGTGACCAATGTTTGAACTACTTTAAGACAACTTTCTTATTGCTGTtgatgtaaaaatagactgtgcACATTGATGTATTAAAGATTCCCATAATCGATGGCAGAATGGGTTATGAAAGACTATATTGGTAACTATTGgtaagtgtaaatgtaaaatccAAATATGTAAATCTTTTGAAATAATagtttttgtgatgtcacaaagacagtcacaaaaaatacatatagtaTCTGTCAAAagtttctcattcaatgttttattttttcccctacattgtaaatacatactgaagtcatccagactattatggatcacataaggaatcatgtattaacttaaaagtgttaaacaaagcctTTAGGTGGGATTCTGTTAacttctgaggctggtaactctgatgaacttatcctgtgcaacagaggtaactcttggtttTCATTTCctagggcagtcctgatgagagcctcttttatcataacatttttgatttgtttaacttttttgtttactaaatagttACATATGTTCATCTTCATTGTTTGGATgacttaagtattaatctacaatgcagaaaaaaaaaatggaaaaaaacgccactgaatttaaggtttgACTGTTATTGTATATTcacctttatatttatatagttatatttaactgaaataagtTTTACTCCACCCATAAGCAcagtaacaaaaatattgttGAAAAATGTACAAGAAATGTATACAATCATTTTTGTTTGGTAGAATATATGTCTTTTACCCCTAATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156366 lncRNA upstream 20399 35288643 ~ 35289248 (+) False G115765
TU156368 lncRNA upstream 20399 35288643 ~ 35289248 (+) False G115765
TU156372 lncRNA upstream 20399 35288643 ~ 35289248 (+) True G115765
TU156365 lncRNA upstream 28720 35280609 ~ 35280927 (+) True G115764
TU156358 lncRNA upstream 71487 35237620 ~ 35238160 (+) True G115757
TU156385 lncRNA downstream 903 35321962 ~ 35349945 (+) True G115774
TU156390 lncRNA downstream 3364 35324423 ~ 35325420 (+) True G115777
TU156391 lncRNA downstream 5172 35326231 ~ 35333542 (+) True G115778
TU156392 lncRNA downstream 7268 35328327 ~ 35333587 (+) False G115778
TU156484 lncRNA downstream 110716 35431775 ~ 35432139 (+) True G115848
XM_007254372.3 mRNA upstream 40276 35254096 ~ 35269371 (+) True hemk1
XM_007253265.3 mRNA upstream 485938 34815978 ~ 34823709 (+) True cav3
XM_022675715.1 mRNA upstream 505366 34798245 ~ 34804281 (+) True LOC103023460
XM_022675714.1 mRNA upstream 529882 34777298 ~ 34779765 (+) True LOC103034490
XM_007253267.3 mRNA upstream 536712 34761583 ~ 34772935 (+) True parp3
XM_007254349.3 mRNA downstream 141741 35462800 ~ 35471205 (+) True LOC103022280
XM_007254347.3 mRNA downstream 181997 35503056 ~ 35523915 (+) False LOC103021651
XM_022675721.1 mRNA downstream 190282 35511341 ~ 35523915 (+) True LOC103021651
XM_022675724.1 mRNA downstream 232542 35553601 ~ 35559726 (+) False LOC103045376
XM_007254338.2 mRNA downstream 232544 35553603 ~ 35559726 (+) False LOC103045376
XR_002650708.1 other upstream 233021 35057150 ~ 35076626 (+) False LOC111193767
TU156333 other upstream 300705 34920701 ~ 35008942 (+) True G115736
trnaf-gaa_1 other upstream 882107 34427468 ~ 34427540 (+) True trnaf-gaa_1
TU156151 other upstream 917688 34380304 ~ 34391959 (+) False LOC103038162
XR_001518742.2 other upstream 970730 34330998 ~ 34338917 (+) False rbm38
XR_002650712.1 other downstream 234903 35555962 ~ 35559726 (+) True LOC103045376
XR_002650711.1 other downstream 234920 35555979 ~ 35559726 (+) False LOC103045376
TU156582 other downstream 353589 35674648 ~ 35676035 (+) True G115917
TU156626 other downstream 409320 35730379 ~ 35733579 (+) False G115931
TU156625 other downstream 409594 35730653 ~ 35733579 (+) False G115931

Expression Profile