RNA id: TU156600


Basic Information

Item Value
RNA id TU156600
length 2664
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G115925
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35661443 ~ 35664877 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaaacaaacaccaatAGAAAAGTATGCCTATATCCAAATGTCcaaaaatcaatgaaactcTAGACATAAATTGCAAAGAAACTATTTCTTTGTCAGAGAACAAAGATAGAATCccaaacatacatacaaatgTACATTTTGTTCTATGTGCATGTCTTTATACAAAAGTGTCACTTTCTCTGTGTACACTGTTCTTAAGACGGTCCTTATAATGACAGATTTTCGCAGTTCACAATCAGTACTGGGAAGGCACTTTGCAACATAcgaatatacaaaaatgtaagcagaaTTTGCGTGCACGCACAAAacgcataaaaaaaacagacatacaCAGTGACTgaggaaagaaaaacacttcCAGTGACACAATGTCCCACCCAAAATATGAGGcaacaaataattataataaaccaTTAAGCATTGAATTGTCCCCAAGGCCCACTTTCATTCAGCAAATAAAATGAGGAAAGCACTCAATTCAGCCTGCTAGAACTGGAGTCAAGAGACGGTGACTGAACATGAATTAATGATGATCTCTACACTGTcagattaattttattaatttcagaaACAATCTGCtcgaaaaaaaaagtcaagcagAATAGTCAAAGCAACTTAGAAAAATGCTGTCATGAAAAAAGTCTCTTCTCTGTACCTTATATAAAGGTATACTAACCAGAAGGTAAATGCAAAGCAAATTTGACTGTATACCTTCTCAGATTACATATCAACTGTCCAAACCTATGTAGAAACTAAAACCCATACAATGTAATATCTGAAATGAGACATTATTAAtgtaattcattttattaattacttaTCATTATTTCTTAAAACACCTGGTAGCAGACTGTGCTGCCAGGTATCATATGCCCACAGTAGCAGCATACTGTAGcagtatactatactatACAGTATACTCCAGTACCTGGAGGATATATTAAATGTGTTGCCATCTGATCTGAAACTAAGGAATACTGACACAATTACTGAaactcacacacaaaaacagttttttgatTATGATAACACACCCCAGCACctgcacaaataaaaaaagaaaaaacaaatgtagGGATTTACCGGTACCAACTTAATATAACTTAGGCTCTTTGCTCAAAGTCGAACACCCATTCCTCCAAGAAGGCCAAGGAAAGCTTATATACAAGGACCCCATTCACATAGATTAAACAAACGAACAATATTGGccatagatatatatatacacattttttacgTGTGTGAACATTATACACATGTCATGATAGGAACTCTTAAGTTAAGCAGGAATGTATAGAAACATcatagaaaaaaatctgatatattaaaaaaaagcccTCTGATTATATTACATTCTGAAGATAAAGAGACCAggtgcacacacaaacacacaaaacaatcaagctgtctctctctcactcacaaacacacctcacatacacaaaaaaaaaaaaaaaaaaaaaacacacatacatacagaagCTCTTTTGCGGGCCTCTTGTCAGACATACAGCTCAAAGAAATACCAGCACAGCACAAATCTAAATCTGAACAACTTTATATAAACCATTTCATAAAGAAGACTGGGACACTAATATCAAtaagttaataaaatatactCTTCATTTCTTGCAATATCTTACAGTCATACCTGAAATTGGTCCCTGCTGAATATTCAAAACTCACATGCACTGTCATGTAACCCAAAACAATCCTTCTGGCAAGTATCCATgatgcaaaataaaattaaaataaaagtagcaATAGCAGGTGTGGATTAAATTTAAGTGATTAATGATGATTAAACTTAATGACTTTAGACAGGCAGGgttattgagatttttttaacCCAATAATCGTCTTAAGTCTAATGATCAGCCTCAGCAGCTGAAAGGTTGTCAAGCTAAAAAATCAAGAATTCAATTGTGTTAACATTAGTCTAACAGCCCAAACCACCAGTGGCTCGACTTAATCTCTGGAACAAACTATGACACAGGAAATGGAGAAGGTAGTTAGCTGAAATCGCGCCAACGAGAAAACAGAATGGAATACATATTGGCAAACATGTACGTTCAAACTGACAAAAACAAGTCGACGGTATGAAACACAAAAGACAAAGTAGTCTACGATGACACTGATGAAAAGTAGAAAAGCAGTAACTCAAACTTGTGGCAGTCCAGAAAGTACAAACATATCTCTTTCACAAGAGAGTCACTTGTCTCCTAAACCCATAACACTGCTCCCAACCTCAGAGTCCACTAGTGAAGAGGCGAAAGCTGATTGGACGATCTGAAACCCAAACGACTCCAGTAGCGACATGTTCTGTTGGGGCGAAAAGGGCGAGCCCAGATCCCCAAGGCTGGACCCCGTCCCACTGTGTTTCTTATGCACCCGCTGGTGGTGCTTGTTGAGGTAAGACTTTGTGCGGAAGGTCTGGCCACATTCGCCACAGGCAAACTTCTTTTCTGGGTCCGTTTTTTGCTTGGAGCTGCAGGGTGTCGCCGCTGGGCCATCAGCCTCCCCATTGAAGATCAGAGAAGTCACCTCTAGCTCCTCACCTTCTGCTTTATGCTCGTGCTTCAGCTCTGTCCCGTTCGAGAGTTCCCCAAACGCAGCGTCTGAACCATCAGAATCCTGATGGTGgcatttcccagcattctccT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156520 lncRNA upstream 111896 35535980 ~ 35549547 (+) True G115876
TU156517 lncRNA upstream 129422 35529492 ~ 35532021 (+) True G115874
TU156516 lncRNA upstream 134933 35525409 ~ 35526510 (+) True G115873
XR_002650710.1 lncRNA upstream 136354 35524334 ~ 35525089 (+) True LOC111193769
TU156580 lncRNA downstream 11301 35676178 ~ 35676841 (+) True G115915
TU156743 lncRNA downstream 197337 35862214 ~ 35862823 (+) True G116020
TU156763 lncRNA downstream 230070 35894947 ~ 35899393 (+) True LOC111193772
XR_002650716.1 lncRNA downstream 230109 35894986 ~ 35899081 (+) False LOC111193772
TU156773 lncRNA downstream 266047 35930924 ~ 35933206 (+) True G116050
XM_015607117.2 mRNA upstream 318 35648837 ~ 35661125 (+) True LOC103043339
XM_007254329.3 mRNA upstream 318 35651335 ~ 35661125 (+) False LOC103043339
XM_007254333.3 mRNA upstream 36235 35621652 ~ 35625208 (+) True hdhd3
XM_015607115.2 mRNA upstream 36235 35621705 ~ 35625208 (+) False hdhd3
XM_022675725.1 mRNA upstream 41370 35616324 ~ 35620073 (+) True trub2
XM_022675728.1 mRNA downstream 22749 35687626 ~ 35709189 (+) True sfi1
XM_022675727.1 mRNA downstream 25153 35690030 ~ 35709189 (+) False sfi1
XM_007254327.3 mRNA downstream 25237 35690114 ~ 35709189 (+) False sfi1
XM_022675732.1 mRNA downstream 44403 35709280 ~ 35717863 (+) True LOC103040678
XM_007254318.3 mRNA downstream 44403 35709280 ~ 35717863 (+) False LOC103040678
XR_002650712.1 other upstream 101717 35555962 ~ 35559726 (+) True LOC103045376
XR_002650711.1 other upstream 101717 35555979 ~ 35559726 (+) False LOC103045376
XR_002650708.1 other upstream 584817 35057150 ~ 35076626 (+) False LOC111193767
TU156333 other upstream 652501 34920701 ~ 35008942 (+) True G115736
trnaf-gaa_1 other upstream 1233903 34427468 ~ 34427540 (+) True trnaf-gaa_1
TU156582 other downstream 9771 35674648 ~ 35676035 (+) True G115917
TU156626 other downstream 65502 35730379 ~ 35733579 (+) False G115931
TU156625 other downstream 65776 35730653 ~ 35733579 (+) False G115931
TU156628 other downstream 65776 35730653 ~ 35734359 (+) True G115931
TU156853 other downstream 317242 35982119 ~ 35988060 (+) True G116103

Expression Profile