RNA id: TU156813


Basic Information

Item Value
RNA id TU156813
length 2313
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G116076
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35930934 ~ 35933246 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATACACTACATTTCTCATGTAGAGAATAGTTTGGAAAGTGTTCTGTACCTCACAGAACTAAATCCTAacctttattattttaccattttaatctGTGATTATACATACATTCCCTGCAGTGCACATACCTCTCACTTTTGGAAGTGCTAAAGAAGAAATATGTGTATGAAAGttttagtttctttttattCATCTGAGCAGGGATGTAGACCTGGCTTTTCACACTAGAACTGGCAGCTATACTGTAATGAGTGTAAGGTCTTTGCCAAATAAAGATCAGAATTTTTAGCGTCTATTTAATAGTGTTTGGTTATGGATCTGCCAGAAAAACCTACTGTTCTAAAAGCAGTTTTATTAGACCACCACTAGCAAGGTTTGCTTATTTAGTCTCTTTAGATTTTGTTAGAAATTTAAGTCCTCTATTTTCATAAACTACCACATAAGAAATgccaaatgaaaaaaagaactaTGGAATATAAGTATGCAAAAAGAGCTTTTAATAAATGACTATAATCCTGAATAATAGATACCCATTTAATACACAACCTTTCTGTATAATAAGAGTGTTGCTCACTACAGTATAGCTGTTAAAAGGTTAAGCCAAACAAAATCAACTTGTAACACTCACACAAGTACATTACAATGCACATAATGTACCCTAAGAATGCGATGATAAACTATTTGGACACTTTTCAACACTTTTGAGAGAATCAATCTAGTTTTAACATCTATATTTTTGGTATTATggtgtgaaaaaacatttttgcaataacagATATTGGAGTCATATACAAGTTTGTCTAAGTCGTGAGAGAGGATGATCTGTGGCAAGATCTACAGATTTCGCCACCTTTCAAAGAGGTCTTGATCAGCACTGAGTTTGCTGTGTTTCTCAGGCCTTGTCTTGGTATATGTGTGCTGTGGGTTAATAAATCAGGCTTGGGggtggtggggtgggggggtatAAGGGAGATTGTACTTGTTTTAACTGTGAGATATATGGGATCATAGATAACCTGATTGTGCCATAGGTGATTCTTTTTGCCAAACAATCTTTGAAAAGAGGTGTATTGTTATTAACTTGTGGGGAAATTAAGGTACAGTAGCACACATCTTAGATtcctgtgtttgtgttcatGGTGTGAGGCCTCTTTGgggatcttttttttcttcaggggTTTTTTCATGGTAATCATGAGTTTCATTCCATTATCAGGGTAAATCCTAAGTAGCTTTTTGCTGTGAATCTCATTCGTCCTGGGCTGGTTACACTTTAGACCCAGACTAGTTGCACTGAAAATGTAATTAGGATAGCAATGATCCTAAATTATTGTAAATCCCACTGTAAAAGTACAAGTCTTCAGAATTTACAAAGAATTGTTCAGCATTCACTTAGCATTTATAAGTATTTAGTGATTTAACCGCAATCTTTGTTTCGACTTTTCTTGATGACTGGTTTGTTGTTTTCATCAAAACAACTATGTACCTCTCCCTTGATGCAATGTCATACTTGGGATTTGCATTCATCAAGTTCTATTTTCATCCAAACCTGAGATGAATTTTCAACCGAAGAGGGTCTGGAAGGAAACCTAACTGACAGCTGAGTGACTTATTGGCAGTTGGGCTTCATATATTGTCTTAATAAGGCTTAGGCAGAGCTCAATGACTGTGATGTACTGTACATTAATGTGAACGTGTGCCAAACGTGTCCGGGTAAGAGAGAGATCGAGAGCGGCTCACGCACGGACTCTTGGTCAGAGCCTGCTGTTCCTGAAGCTCTTTGAACAGTCTTACTCTCTGTATGAATGTAACACACAGAGATGGACTCGTAAAGCGCCGCTTCAGGCGATTTACACTTGATGTTTCTATCCTTGctgatgaaaaaaaagtgttaccgTTTTGTCTTGGAATTTCAGAATTTTTTCCAGTTGCTTTCtttgtatacagtatttacattttcttgtaagtatgtatttctgtgtgtgtacataACATGTATATGAGTATGCGGTGGCAGTCCGCTTCTCTTGTGTTCGTTTACGTAACACACTACTTTCGCCACAGCCGTTGAATCGTAGGAAGAACAGTCAGTGCATCAAGATTCATTTCATTATATGGACAATGCATCGTCGTCTCTGTGCAAAGAGATGAAAACTTCAGTTGTCTGTTGTAGTTGCAGTCCTAACCCTTCCCTCCTCCTTACAATGCAAAACAGGCATGCCCCATATTGAATGTTATTTTCAGTCATATAAACCTTTGATGAGGAAGGCTTgtacaataaaaatgaatgtgaCTAAATGTAATGTCAATATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156836 lncRNA downstream 24932 35901252 ~ 35906002 (-) True G116092
XR_002650715.1 lncRNA downstream 32217 35892638 ~ 35898717 (-) True LOC111193771
TU156833 lncRNA downstream 49367 35881367 ~ 35881567 (-) True G116089
TU156815 lncRNA downstream 91898 35838834 ~ 35839036 (-) True G116078
TU156787 lncRNA downstream 136457 35786347 ~ 35794477 (-) True G116060
TU156845 lncRNA upstream 14485 35947731 ~ 35948182 (-) True G116097
TU156944 lncRNA upstream 110120 36043366 ~ 36044196 (-) True G116166
TU156952 lncRNA upstream 132369 36065615 ~ 36066279 (-) True G116171
XR_002650717.1 lncRNA upstream 142232 36075478 ~ 36076803 (-) True LOC111193773
TU156977 lncRNA upstream 261299 36194545 ~ 36254205 (-) True LOC111193775
XM_022675745.1 mRNA downstream 11517 35908222 ~ 35919417 (-) True LOC103031425
XM_007254298.2 mRNA downstream 41491 35882301 ~ 35889443 (-) True LOC103034932
XM_015607112.2 mRNA downstream 43326 35882301 ~ 35887608 (-) False LOC103034932
XM_022675738.1 mRNA downstream 50643 35869803 ~ 35880291 (-) True LOC103034399
XM_022675747.1 mRNA downstream 82031 35844572 ~ 35848903 (-) True ccdc36
XM_007254291.3 mRNA upstream 120 35933366 ~ 35946834 (-) False LOC103032599
XM_007254290.3 mRNA upstream 120 35933366 ~ 35946834 (-) False LOC103032599
XM_007254289.3 mRNA upstream 120 35933366 ~ 35946834 (-) True LOC103032599
XM_007254284.3 mRNA upstream 22066 35955312 ~ 35958818 (-) True LOC103031109
XM_007254287.3 mRNA upstream 27407 35960653 ~ 35967790 (-) True LOC103031953
XR_002650714.1 other downstream 50643 35869803 ~ 35880291 (-) False LOC103034399
XR_002650713.1 other downstream 50643 35869803 ~ 35880291 (-) False LOC103034399
TU156800 other downstream 115612 35813621 ~ 35815322 (-) True G116068
TU156262 other downstream 1408516 34520957 ~ 34522418 (-) True G115681
TU156056 other downstream 1926174 33990622 ~ 34004760 (-) False LOC103043026
TU156811 other upstream 21863 35955109 ~ 35958429 (-) False LOC103031109
TU156955 other upstream 123317 36056563 ~ 36061929 (-) True LOC103028059
XR_001518677.2 other upstream 1090145 37023391 ~ 37031360 (-) False LOC103023810
TU157486 other upstream 1108115 37041361 ~ 37045788 (-) True G116581
trnaq-uug_2 other upstream 1159753 37092999 ~ 37093070 (-) True trnaq-uug_2

Expression Profile