RNA id: TU156977


Basic Information

Item Value
RNA id TU156977
length 890
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id LOC111193775
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36194545 ~ 36254205 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgaagtTTTATGCAGAAAATAACTAaacatttaagtcttttttGTTAGTGTTGAGAGCCAAAAGGCTCAGAATTCTGAAAATGGCCACtatttcattaaatatttatattatttgtttctaATAAGTACAATATTTCCCTTTTACTACTATTGGCTAATACTGGCATTTTAAcccaacaaacaaataaataaataaataattaaataaataaatgattaggtgtttaataaatacagataCTTTTACAGAGTATATGGCCATCCTTTAGAGGGCAGCACAGTGTTAATTGGCTAGTCACAGTTTGGAACTCGAGCTGTTCATCAGTTTATTCGGAGACGCCGTCCTGTGGGAACAAAATTCAGCTATTTTGAGTAAACCTTTCAGATTACTGATTCCAGAAAACGGGTTCCATGGATCAGCTGCATGTGTTGATGAAAGCTAAGAGGAATTCCTGGAATACCTCGAGGGCCAACCATCGCTGGACCTGGAGGACCACGTTCACCCTACAAAACGTTCCACACAAGCTGGTCTGCCAGCCTCACCCAGTTCTCCAGCTCGTCCTGGTACTCCTGGTATACCAGGTTTTCCTGGCTCTCCTGCCTGTCCTGGAGGACCCTCTGGGCCTCTTTCTCCAATAGCCCTGCCTGTGGGGCCCTGAGGGCCAGGAGGCCCTTTCTCACCCTGATCACCTTTTAAACCTCGCTCACCTGGGAATCCTCGAGCACCCTTAGATcgggaaaaaattaaaaccacagaaaaagaacaaagaagaTTAAGGAATAGCAGTGACAAAAATATTCAGCTACTAACATACAGCTAACTATTCAAATGAGCTTCATatcttaaactttaaaatactattaaacTGTCTTGTTTCATATACTTCAAT

Function

GO: NA

KEGG:

id description
ko04320 Dorso-ventral axis formation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650717.1 lncRNA downstream 117742 36075478 ~ 36076803 (-) True LOC111193773
TU156952 lncRNA downstream 128266 36065615 ~ 36066279 (-) True G116171
TU156944 lncRNA downstream 150349 36043366 ~ 36044196 (-) True G116166
TU156845 lncRNA downstream 246363 35947731 ~ 35948182 (-) True G116097
TU156813 lncRNA downstream 261299 35930934 ~ 35933246 (-) True G116076
TU157008 lncRNA upstream 69935 36324140 ~ 36330054 (-) True G116219
TU157079 lncRNA upstream 95837 36350042 ~ 36360601 (-) True G116279
TU157086 lncRNA upstream 196723 36450928 ~ 36458089 (-) True G116285
XR_002650719.1 lncRNA upstream 205538 36459743 ~ 36483675 (-) True LOC111193777
TU157100 lncRNA upstream 230897 36485102 ~ 36486943 (-) True G116295
XM_007254277.3 mRNA downstream 80505 36082114 ~ 36114040 (-) True LOC103029202
XM_007254273.3 mRNA downstream 132261 36056570 ~ 36062284 (-) False LOC103028059
XM_022675752.1 mRNA downstream 132833 36056570 ~ 36061712 (-) False LOC103028059
XM_022675753.1 mRNA downstream 133095 36056570 ~ 36061450 (-) False LOC103028059
XM_022675751.1 mRNA downstream 133110 36056570 ~ 36061435 (-) False LOC103028059
XM_022675765.1 mRNA upstream 106547 36360752 ~ 36427709 (-) False LOC103030168
XM_022675767.1 mRNA upstream 106547 36360752 ~ 36427709 (-) False LOC103030168
XM_022675764.1 mRNA upstream 106547 36360752 ~ 36427709 (-) False LOC103030168
XM_022675763.1 mRNA upstream 106547 36360752 ~ 36427709 (-) True LOC103030168
XM_022675766.1 mRNA upstream 106547 36360752 ~ 36427708 (-) False LOC103030168
TU156955 other downstream 132616 36056563 ~ 36061929 (-) True LOC103028059
TU156811 other downstream 236116 35955109 ~ 35958429 (-) False LOC103031109
XR_002650714.1 other downstream 314254 35869803 ~ 35880291 (-) False LOC103034399
XR_002650713.1 other downstream 314254 35869803 ~ 35880291 (-) False LOC103034399
TU156800 other downstream 379223 35813621 ~ 35815322 (-) True G116068
XR_001518677.2 other upstream 769186 37023391 ~ 37031360 (-) False LOC103023810
TU157486 other upstream 787156 37041361 ~ 37045788 (-) True G116581
trnaq-uug_2 other upstream 838794 37092999 ~ 37093070 (-) True trnaq-uug_2
TU157786 other upstream 2127065 38381270 ~ 38384598 (-) True G116805
XR_002650725.1 other upstream 4106196 40360401 ~ 40363960 (-) False LOC103040080

Expression Profile