RNA id: TU157190


Basic Information

Item Value
RNA id TU157190
length 2398
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G116360
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36840841 ~ 36843238 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCTCCAAACACAGGCATACAAGGCTCACTTACCTCTCCAAGTACATGATCTGGACATTTATCTGGACTGTGTGAACCTTTTCCTGTGTTTAGGAGTGAATAGTTGGACAAAAATGACGGCACTAATCTTAAACTGTGCATTGTTGTGATAAATGAGTAGCCGTTCAAATATCGCTGTAATCTATTTAACAGCGTAGTCAAGAGTCTGTGACGCCCTGAAGCTAAAGGAAATATGAGAAGTGTACATAAAGAACTTCTGAAAGAagatctctttttctccctctcccgCTCTCcgcctttctttcttttttctctctctctctctctctctcctctccctctttctattcGGAATTCCttaggtcagtgttaatgagtAAGCATGCCATTGTCTAACCATAATAGCTGCAAGAACATCACTTATAGACATCTACAATTAGCAGAaacaacaaacatacaaatatgtCCTATAAGAGGCTGGGTAAAAGGAATCTACCATATATATTCAACCTAAAACTATGttctttatttgcatctgttgtAAGCTAAACAAAGTTACACAGCATTCAACATATTGTGGAATTAataacctttttctttttaaagtagCAATTTATTCACGTTGGACCTTAAAGTTTGTTAAGACTACTTTACCTCGGGGATCTAGGTCATCCTGTGGACTACGTTGCTGCCACTctcagagagcacaattggtgttggtaattggccttccaaattggaGAGGAAAAATGCATCCAGTtagatattataaattataaaaagatTACTTTACTCAGACTGTGGGACTGTAAGTAATTTGCAAACaaaattttaaacacatttcacacacattcaataaacatatttataatatttgttgAGTTAGCACTTCCTGGGTTGGTTTCCCAGGCAGAGAATAAGCCGAGCCCTAGACTACATACCTCTTCGAAAGGACAATACCTGTTCACAGTACCGCatagtccaggactaggcttaatccctgttcaGGAAACCAACACTTTATTAGACTGAATGTGATTTGTTTGCCAACCTTCTGTAAAGCTTAACCAACATCAAAACAATTGCTAATAGCAACTAGCTGTGTGACTGTATCTGTGGGATGATCATGAGTTAGTCAAATGTAGCAAATTTAAACAGCAAGAACCAGCAATTATTTGTAATATGTGGGAAACACCCTGTTTCTTGTGAGGAACAAGCGTTTGTGTTTTGGGAACAGTCCAGCATGTTTTGGTTACCAAGCCAGTCATCTATCTTATGACCTCAGCAAGCTTTCCGAATAGAGGCTGATTCACACCAGTGCCCTGCAGTGTGATGCCTGTGGTCACAACACCCATTAAACACAAAATCCTTACTTTCCTTCTgtccaacaatttgtccttttttaaaacatgttgtgTCTGCCACATATTGTATGACAGTATGTGCACTAAATTCCAACAGCATATTAATGTCAGTCTTTAATCCAAGATACTTTTAGCATGGCTAAATTGCCTAGCAACAAAAGGCCTTAATCTTTCAACAAATAAGAGAAGTGAGATATGAACAGTGTTCTTGTGTGAACACCACATCCCATACCAGCCGTGCCCACTGACAGAGGAATGATTCACCACGATTAAAAGTAGACACAAGAGCCACACAGACggaagagagaggggaagagagaatGAATGAGAGAGAACAGGGGAAATGGCAGGACAGTGAGTCACACTTTAGACTGAAGTTATTTGAACCACTAGGCCACTACACAAGCCCAACAGCACACGCACACCAGCAGAAAGAAGGGAAGTGAGAGCACATTTCTGCTCAAGCTTTTTGAAATGAGAGAAAGCATTGGACTCAGCCCAAACTGCTTGGTTAATAATGCAGACTTTCGTGAGACAGGCAGTGTCCTTGGCAGCTGGTTTCAGTGGAACTTTTTTTATGGGGGTTTTGTTGGGCCTTCAGTTCTtactgtagctccacccatttagctgcAGCATTGTGAGTGCATTCTCTGAATCTTGAATGAGCGCCAGCAAAGGAAAAGTCTGAGAGTCTGTAAGAAAAGCTGGAGTCTCTGCATGAGCACAATGTTGTCTGGTATAGAACACTGGTGTGAAGTTCATTTTTTATAGAAacacattttaccaaattgaaaacctctggagtataatcaagaaaaagatgcaTGATTACAAGCATTCAAAACAAGctcaactgcttgaatttttgtaccaggagtggaataaagttatccaaaagcagtgtgtaagactgttggaggagaacatgccaagatgaatgaaaaccaGAGTTAACTTCTGAGCTCTTAAACtatgaaattgttttatttgcactatttgaggtctgaaagttctgaatctttttgttatttcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157183 lncRNA upstream 6319 36833489 ~ 36834522 (+) True G116353
TU157189 lncRNA upstream 9265 36823464 ~ 36831576 (+) True G116359
TU157186 lncRNA upstream 12973 36825294 ~ 36827868 (+) True G116356
TU157176 lncRNA upstream 98827 36732148 ~ 36742014 (+) True G116349
XR_002650720.1 lncRNA upstream 337279 36501233 ~ 36503562 (+) True LOC111193778
TU157209 lncRNA downstream 65965 36909203 ~ 36909649 (+) True G116378
TU157318 lncRNA downstream 168215 37011453 ~ 37014185 (+) True G116466
TU157376 lncRNA downstream 255016 37098254 ~ 37098533 (+) True G116511
TU157372 lncRNA downstream 278452 37121690 ~ 37124435 (+) True G116507
TU157406 lncRNA downstream 347832 37191070 ~ 37199094 (+) True G116532
XM_007254229.3 mRNA upstream 21748 36747556 ~ 36819093 (+) True LOC103042615
XM_007254233.3 mRNA upstream 118944 36714888 ~ 36721897 (+) False LOC103043543
XM_022675777.1 mRNA upstream 118944 36715103 ~ 36721897 (+) True LOC103043543
XM_007254234.3 mRNA upstream 118944 36715104 ~ 36721897 (+) False LOC103043543
XM_022675776.1 mRNA upstream 126957 36688955 ~ 36713884 (+) False LOC103044253
XM_007254226.3 mRNA downstream 6409 36849647 ~ 36855962 (+) True LOC103041493
XM_007254224.3 mRNA downstream 33410 36876648 ~ 36882405 (+) True LOC103040875
XM_022675782.1 mRNA downstream 61380 36904618 ~ 36919543 (+) False LOC103040047
XM_007254222.3 mRNA downstream 61381 36904619 ~ 36919543 (+) True LOC103040047
XM_022675783.1 mRNA downstream 104727 36947965 ~ 36961567 (+) True os9
XR_002650721.1 other upstream 126957 36657392 ~ 36713884 (+) False LOC103044253
trnaf-gaa_2 other upstream 591996 36248773 ~ 36248845 (+) True trnaf-gaa_2
TU156853 other upstream 852781 35982119 ~ 35988060 (+) True G116103
TU156628 other upstream 1106482 35730653 ~ 35734359 (+) True G115931
TU156625 other upstream 1107262 35730653 ~ 35733579 (+) False G115931
TU157374 other downstream 256776 37100014 ~ 37111598 (+) False LOC103045245
TU158023 other downstream 2515633 39358871 ~ 39359388 (+) True G116997
TU158258 other downstream 3956233 40799471 ~ 40803543 (+) False LOC103033994
TU158255 other downstream 3956333 40799571 ~ 40803543 (+) False LOC103033994
TU158846 other downstream 5508569 42351807 ~ 42355784 (+) True G117642

Expression Profile