RNA id: TU157236


Basic Information

Item Value
RNA id TU157236
length 2198
lncRNA type inter_gene
GC content 0.37
exon number 4
gene id G116398
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36710256 ~ 36721893 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acCAATGTACAAAATCAAACAGGTGAACGTTAATGGTGGGCTAGGGTTGCATAATCATGACGTTCATTAATATTCGTACATGATGTTAAAGTATCACAAAATGAACCCCTTTGTAGTTATAATATGACAGTcattattactgtaattattattaattgaaatgtaccaaaaaagAATACATATCAACATAAGAGATGAGTGCACTCTCTGGTCATGATTATGAACGCTCCCAATCTATCTTAGACCTGCTTTCCAAATAAGTGTTTTTCCCTCTTGAGTGTTTCTGTCAGGCTGTGGTGCGAGtgttaagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggttgtgtgatCAGAAAAGATGAAATGTTCGTATTCCTCTGGAGGTAAAAGCAATACATTGTCTTCAATATGTatgcaattcttttttttacccagtagcaaaagtttggacacaccttattaGACATTCTGATCTACAGGTTTATGCCTACAGGTAAGAccaatcagccacaacattaagaCCACCTCATTGCCAGTatttaattacagactgtagtccttttgtttctctgcatactttattattctcattTAACCCTGTTTGTCACTGAATAGGATTCCAAAAgaacaccacagagcaggtattaatTATTTGGGTTGTTGGTCATTGTcaatatgtgtatatacatatatacatacatacacacacagaggtgtgtccaaacttgtatCATCAGGGAGTGTATATATTAATCTGCATGTACTACAGCTGCACATGCACAAACTTGTCACTAATGCCAGTGTGTCAGTATCTAAATGATGTATGATACATTATGAGTCTGGTTTATTTAGAGAATATTACAGTATTGAGACAAAAAATGCCCTTTTGATTTGATAAGTGTTAATAGTCCTCATGCCTTTCATAAAGTGCATAAATGGGtcaagaaagaaggaaagaaaaatacaCCGTGTCCTAATGCTGAAGCAGTGTGTTGGAGAGGGCTGGAAagtgctgtaaatatatattattttggttCCTTTCTTTTGACATTTGTTCAGTTTTAAAGTAACAAGAAACACATCCATTCTCATCTTCCATTCATTTCATTATATGACACCACCAAGTATATGACAAAAGAtttctgaccaaaaaaaaaaaCCTGCAACACTACTTATTCATCAACTTCATCTATTCACATATTACTAGACCCTACACTTACATTTGGGATCCCCTTgaaaactgcactgaaaaacatggaaatgtaaagaaaatgcatATGAAATAGCAAAGTCAGTGAATTGCAGTTCCACACATCAGACCTAATGCTGTTCTAAagaaaagtatattttagttCAGTGTTTGTAACAAAATTCTGTGCTTTAAATTCAGCTCAATGAACCACTTcaagtttaaataatttatgagaaataataagatattataaaacataattaaaaatgtaatacaaaagaaaaactgtattttGGCTGTGGTGGATAGAATGCTTAAATGAATTCAAGAACTATTCActaaaagaTAAAAGGCAAAAGGTCAATAAATCCAGGAGATCTTGAGTACCGTCACTTACTAGATCACTTAAAACGTGTGCCAGAAAACAAAACTCTAAATTGACCCTTCTTAAAAAGTGCTTAAACTTGGAAGGGGGTGAAGGGGgataaaaataaagtgattaTTAAAATGACATTGTGACAGGGAATGCTGAAATTAGGAGAATAAAGAATTGTAGCTtccaaagaaataaaaagatcatATTGACCCTCTCCTACCCCTTTTTACTTATACTTGGTCCTCTGCCCGGTGGTAAAGAACAAAGTCTTCAGCCACACACCATGAAGACTCAAACACAGCATATGTGTCATACGGCAAGCGCCTCAGTCTCTATGTAGATCAGCAGATCTTCTCCAGGCTACTCTTCAACAATCTGGCCCAACTCACATGTTGTAGGCCACATATATAGGGTCTAACTGATCAGCAAGGAAGGAGTCTCTCAGGTGCATCCTCTGCTTCTCCCCTCGAGAGTTGATGGGGATGACCCCAGGATCAACAATCACCACCACGCCCACGATCAGGTGATGCTCCTCCAATACCACGTTAGTTATCAGAGGGACCAGGTCCAAAGCATCCTGCTCTGATCCACACAGCTCAGACACCACCACCAGAAGATTGGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157240 lncRNA downstream 2083 36707769 ~ 36708173 (-) True G116399
TU157255 lncRNA downstream 10886 36696905 ~ 36699370 (-) True G116413
TU157256 lncRNA downstream 12421 36696905 ~ 36697835 (-) False G116413
TU157254 lncRNA downstream 14811 36691957 ~ 36695445 (-) True G116412
TU157150 lncRNA downstream 86776 36617386 ~ 36623480 (-) True G116337
TU157235 lncRNA upstream 1115 36714942 ~ 36721893 (-) False G116398
TU157239 lncRNA upstream 3054 36716881 ~ 36719613 (-) False G116398
TU157248 lncRNA upstream 14164 36727991 ~ 36728239 (-) True G116407
TU157282 lncRNA upstream 86015 36799842 ~ 36820814 (-) True G116434
TU157273 lncRNA upstream 141033 36854860 ~ 36855962 (-) True G116426
XM_022675773.1 mRNA downstream 190148 36488583 ~ 36520108 (-) False LOC103029840
XM_022675772.1 mRNA downstream 190148 36488583 ~ 36520108 (-) True LOC103029840
XM_022675774.1 mRNA downstream 190148 36516786 ~ 36520108 (-) False LOC103029840
XM_022675770.1 mRNA downstream 230055 36459983 ~ 36480201 (-) False smarcc2
XM_022675779.1 mRNA upstream 16136 36729963 ~ 36733391 (-) True LOC103029516
XM_022675780.1 mRNA upstream 23919 36737746 ~ 36742046 (-) True LOC107197751
XM_007254228.3 mRNA upstream 111458 36825285 ~ 36830441 (-) True LOC103042096
XM_007254227.2 mRNA upstream 120243 36834070 ~ 36839043 (-) True LOC103041794
XM_007254225.2 mRNA upstream 168983 36882810 ~ 36892252 (-) True LOC103041181
TU156955 other downstream 648327 36056563 ~ 36061929 (-) True LOC103028059
TU156811 other downstream 751827 35955109 ~ 35958429 (-) False LOC103031109
XR_002650714.1 other downstream 829965 35869803 ~ 35880291 (-) False LOC103034399
XR_002650713.1 other downstream 829965 35869803 ~ 35880291 (-) False LOC103034399
TU156800 other downstream 894934 35813621 ~ 35815322 (-) True G116068
XR_001518677.2 other upstream 309564 37023391 ~ 37031360 (-) False LOC103023810
TU157486 other upstream 327534 37041361 ~ 37045788 (-) True G116581
trnaq-uug_2 other upstream 379172 37092999 ~ 37093070 (-) True trnaq-uug_2
TU157786 other upstream 1667443 38381270 ~ 38384598 (-) True G116805
XR_002650725.1 other upstream 3646574 40360401 ~ 40363960 (-) False LOC103040080

Expression Profile