RNA id: TU157423


Basic Information

Item Value
RNA id TU157423
length 3192
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G116536
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 37265276 ~ 37273002 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGATCTTTAGTCCTGAAAGAAAAGACTGTGTTCAGCACAGCACAAGTgtgagggatagagagagtatggAGACAAGTCCAGAATCATCCTTGTCCAACAGAAGAACCAACACAGCGGGAACAAACACACAACCAGTGGAGAAACAGTGACTTTTTCTGAAGAGGGGCCTTAAAAACAGTGAAGAACAAAACTTTGGAATGTCAGTGAGCTCAATTACAGTACAGTGATCCAGGAACACAGTGACAGTAGTGACACTGTCAACAGGCACATTATGTGAACAAAGTGTACCCAGTGGTTACATGTGCAGGGCCAAATCAGAGTGAGCATTCATTCTGGCTGCTTCCCCTGCAGCTaaacgctacactgaggaatgcAGCTGAGAATTAATTCTATTACAGCATGTGATTCTCTGCAGGCAGGCGAACTGAACTGAAATCTGGCACCAGGGAGGGACTCAACTGAGTGTGTTCATatcaacaaaatgaacaaacaaagaaaataaatacagggAAATGCTCAGaccttttacaaaaaaaaaaaaaaaaaaaaaaaaaaacacttcatttaaaacaaaaagtttattaaacatTGGTTAATGTTAAAACTGTCAAATAGCTCTATATAcattgtatataaaatgtactaTAAGGCAATTGttgtctaaaaatagcattgtgTCCAGTGTTAAGGCATTCGGCAAATTTTACAATACAAGTGCCACTgagagtatacacacacacacacaaacatatatatatatatataaatctgaaGCTTTATATGTCACTAAAGCTCATACAACATACAGCTAAAGGACatacaacataaaaacattGCTCATTTCCCTGTGTAGTATAAAGCTTTAGATATATTCTTCTgtagaaagtagaaaaaaaaaagttgtttataaaagtataaaccaaacatgctgcacacacaatactgctgccgccgccgccgtCGCTGCTTTGCTCACGACTCTGAACTTCCCCCAACCTGAGCAGAGCGCTCACACCCAAACAAGGCACTTATTCAGACTTCAGGACAAGGTTCTTGTGTGCTTGCTGTTTTCTGCTTCTCATCTGCTATTTAGACACTGTGCAAAGCTTTTGGTGTGAGAGGAAAAATGCTGGTCTACCCCCAAGAACAGTTTaatgtcagagagagaggggaaaaaatggaaaataaaacaaaacaaacagagaaaaactaaaataatcccAACAAAATGGACAAATGCATCCCATATTTAACAATAAATCAATGAACCGGATCAAGTTGTATTCAGGATTGGAATCTGTGTTGGTTGTCTTTGGGTGTTTTCCAGCACTATTCAGtccagttaaaacagactcCTGGTGCAGACTTCAGAGAAGGTGGTCCCAAACTAAATCCAAAGCGGTTAATTTGTAGTGAGAACATGATCAGACCTTGATCCGACCCgactatcaaatatatatatatatatatcctcatgTTTAggctaaacggctgttcaggtgcagtttaacttgGTTTATTACCCACATAATAACTACAGCTATGAACTAATACAACAACTCCACATTAAACTGCATTGAAATTTGCAATGATCTAGAACACAGGacctttattttgtattttctttcttgctccgcctcagacagctctgaccaataagaGGAGACATCATGCTCACATGGCTTTGTTGTGATGCATTCTGCTGCACTTGCAGGTTTtcttgtgtgaaaacaaaccaaaccaacaggAAAATAATCCAATTTAATCCAAGAACTCgctaactgattcggaccagaaaAACGAACAAAAAGTGTGAAATCACTTTCAAATAATCCAAAACCATTGTAACGGGAAACATCAACAGtacaaaaagtacaaattgAGCAGAGTTTTAATATCTTAACCGTAAACAAAACAGTTCACACTAAGCTAACCACATAATAACTGCATCCCATGCTCGAGAAATGCCACAATTCTCTCGACAGCCGCTTCATAAATCAGGTATTCGGAAAATTTGATAAGACTCATTGACTTACTACACAAACCCCGAGGTTACAAAAGGACAAAAGTGACAAATGATCAGCAGCAATCTCTCATAAAGCATAATTTAGTGTCCAACCGGGGCTCTTTCAGAAGTCACACACGCCCTTGGCTTCTTTTTTCTGCATTACAGGCTGTTTTTTCCTCCTGGATGATGTTATCTAACACAGGCACTTGGGTGAACCTGATGGCTGACCCAGCATTGCACATTGTTACAGGTTTTAAATCACAAGGAATTTCACCGCTCTGCTCGGCCTCGCGTATCAGCTGGCCAAAATAaagcagacagagacagaaatggAATGTTTATATGGAACAGAGTCCTCTATTCCTGCACTGTGCAGGCTTTTTCCTGAGGGCCTGAGGTCATAAACACAGACAACCATTTATATATAGTGCTTCCTGTATTGGCAAGGTATGATGAACAGTAACAGCTCAAGTGGTGATGGATAAActgaaacataataaaacaaacaaacaaacaaacaaacaaaaataataaagcaaagcTTTCCAGCAGAGACTGACAGAAATCTGCAGATGCTCTAtcagtactgtaaaaaaacaccatCAAGAATTCATCAAACTTAAATGTGTGCTTGTTGCGTCTTTGGTCGAGGACACGGACAATGAGATACAAAACACAGAACggaggcctgtcacgataaccattcattttttttgcgataaataatttattataaaaatataaccaGTTAATTCCATTGATcgaatgataataaaatagcataataatgcaattatacattttaagggataaacctttaatgaataattaatagtttatGAGAGGCCGCACTGGTCATTAATGCACggctagctaaaatactgttgAAATAAACCAACATGGAATTTTTTTGATGCCAGCAAATATATTGCATGATAAATCGCTTAcattattattgtgacaggcctacttgaACAGCATCTAAAACAGGGACAGGGATAACCAGATAAACAGATTGTGGCAGATGCAGAAtggtcagtgtaatgtttattaatttaattttaaggctAAATGAAGAAATAGAAAATTGATGTAAAAACTTAATATTtcgttttttaaatgtagtgcagtgtacaagaaataagttttcatccatttttccaattttagttttttcatctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157426 lncRNA upstream 14861 37252207 ~ 37252770 (+) True G116539
TU157406 lncRNA upstream 68537 37191070 ~ 37199094 (+) True G116532
TU157372 lncRNA upstream 143196 37121690 ~ 37124435 (+) True G116507
TU157376 lncRNA upstream 169098 37098254 ~ 37098533 (+) True G116511
TU157318 lncRNA upstream 253446 37011453 ~ 37014185 (+) True G116466
TU157440 lncRNA downstream 163246 37436248 ~ 37436492 (+) True G116553
TU157460 lncRNA downstream 333983 37606985 ~ 37612304 (+) False gabra5
TU157475 lncRNA downstream 398834 37671836 ~ 37673086 (+) True G116574
TU157482 lncRNA downstream 527215 37800217 ~ 37800754 (+) True G116580
XR_002650724.1 lncRNA downstream 579641 37852643 ~ 37886735 (+) True LOC111193782
XM_022675792.1 mRNA upstream 34422 37221320 ~ 37233209 (+) True LOC103043103
XM_022675789.1 mRNA upstream 34422 37221320 ~ 37233209 (+) False LOC103043103
XM_022675791.1 mRNA upstream 34422 37221320 ~ 37233209 (+) False LOC103043103
XM_022675790.1 mRNA upstream 34422 37221320 ~ 37233209 (+) False LOC103043103
XM_022675788.1 mRNA upstream 108311 37131576 ~ 37159320 (+) False LOC103044613
XM_022675796.1 mRNA downstream 251849 37524851 ~ 37612322 (+) True gabra5
XM_015605770.2 mRNA downstream 347034 37620036 ~ 37829531 (+) True gabrg3
XM_007249106.3 mRNA downstream 347035 37620037 ~ 37829531 (+) False gabrg3
XM_007249105.3 mRNA downstream 874940 38147942 ~ 38154159 (+) True nipa1
XM_007249101.3 mRNA downstream 882097 38155099 ~ 38164964 (+) False nipa2
TU157374 other upstream 156033 37100014 ~ 37111598 (+) False LOC103045245
XR_002650721.1 other upstream 553747 36657392 ~ 36713884 (+) False LOC103044253
trnaf-gaa_2 other upstream 1018786 36248773 ~ 36248845 (+) True trnaf-gaa_2
TU156853 other upstream 1279571 35982119 ~ 35988060 (+) True G116103
TU156628 other upstream 1533272 35730653 ~ 35734359 (+) True G115931
TU158023 other downstream 2085869 39358871 ~ 39359388 (+) True G116997
TU158258 other downstream 3526469 40799471 ~ 40803543 (+) False LOC103033994
TU158255 other downstream 3526569 40799571 ~ 40803543 (+) False LOC103033994
TU158846 other downstream 5078805 42351807 ~ 42355784 (+) True G117642
TU158848 other downstream 5078805 42351807 ~ 42355784 (+) False G117642

Expression Profile